Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14880 1075 / 0 Potassium transporter family protein (.1) AT1G70300 1009 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G40540 882 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 657 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 654 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT3G02050 649 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 598 / 0 Potassium transporter family protein (.1) AT1G31120 564 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 562 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT4G13420 539 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 1076 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 1069 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 985 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 845 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 842 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10012888 [exp] 811 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 803 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10032154 [exp] 688 / 0 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10024709 [exp] 619 / 0 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147400 [exp] 1059 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 1059 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 882 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 855 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 738 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 728 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 697 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 661 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 647 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.005G095900 [exp] 640 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10014531 pacid=23170895 polypeptide=Lus10014531 locus=Lus10014531.g ID=Lus10014531.BGIv1.0 annot-version=v1.0 ATGGACATCGAAAGCACCGATCTTTCCCGTAACCCAATCAAGAGAGAGTCATGGAGGGCAGTTCTGACGCTAGCGTACCAGAGCTTGGGAGTAGTCTACG GAGATTTGAGCACTTCCCCTTTGTACGTTTACAAGAGCACATTCGCGGAGGACATCAAGCACTCCGACACCAACGAGGAAATCTTCGGCGTGCTTTCTTT CGTTGTCTGGACGCTTACTCTGATTCCGCTTCTTAAATATGTGTTCATTGTACTTAGAGCTGATGATAATGGGGAAGGTGGTACTTTTGCTCTGTATTCT CTGCTCTGCCGTCATGCTCGTGTCACTACTCTGCCCAATTGCCAGCTGGCGGATGAACAGTTGTCTGAGTATAATCGAGATGATGGCAGTAGGAAGGGAC GAAGAATTGGGTCTGGATTGAAATCTGCTTTGGAGAAGAGTAGATTGTTGCAGAAAGGGTTGCTGGTTTTGGCTTTGATTGGGACTTCTATGGTCATTGG CGATGGAGTTCTTACACCTGCAATTTCTGTTTCTTCGGCTGTTTCTGGGATGGAGCTTTCAATGGCCAAAGAGCAGCACCAGTATATCAAGCTGCCAGTT ACTTGTGCAATACTTGTATCTTTGTTTGCTCTCCAGCACTTTGGAACTCACAAAGTCGGGTTCCTCTTCGCACCTATTGTCATCGTGTGGCTGCTATGCA TCAGTAGCATCGGCGTGTACAATATTTTCTACTGGAATCCACTTGTTTACCAAGCTCTCTCCCCATACTACATGTACAAGTTTTTGAAGAAAACGAAGAA GGGAGGCTGGATGTCATTAGGAGGAATTCTGCTCTGCATGACTGGCTCAGAAGCAATGTTTGCTGATTTGGGACACTTCTCTCAATTATCCATCCAGATT GCTTTCACTTTCGTTGTTTACCCATCACTGATCCTTGCATACATGGGACAAGCTGCTTACCTTTCCAAACATCACATACTCGAAACTGATTACCGAATTG GGTTTTATGTATCTGTTCCAGATTGCTGCTTTGTACTTGACCTCCCCGTGATCAAGTGGACGTTCATCCTCTTATGTTTGGCTGTTACAGTCGGTTTTAG GAACACAAAGCACATGGCTAATGCAGCCGGTTTGGCAGTTATAACTGTAATGCTCGTGACGACGTGTCTAATGTCATTGGTTATAGTCTTGTGCTGGCGC AAGAACACCATTTTAGCTCTTTGCTTTATCTTCTTCTTCGGCTCCTTTGAACTTCTATACTTCTCAGCATCCCTCATCAAGTTCCTAGAAGGAGCTTGGG TTCCCATTGCCCTCTCGTTCATCTTCCTGGCCATAATGTACATATGGCACTATGGAACCTTGAAGAAGTACGAATCGGATGTTCAAAACAAGGTCTCGAT CAACTGGCTCCTCAGCCTCGGTCCGACATTAGGCATAGTTCGGGTTCGAGGCATAGGGCTAATACACACAGAACTCGTCTCTGGCATCCCGGCCATGTTC TCTCACTTTGTCACCAACCTTCCTGCTTTCCACCAAGTCGTAGTCTTCCTATGCGTAAAATCAGTTCCCGTGCCTCATGTTGGACCTGAAGAACGATTCC TCGTGGGGAGAGTTGGACCGAAGGAGTACCGTATCTATAGATGCATAGCACGGTATGGCTATCATGATGTCCACAAGGATGATGTGGAGTTCGAGAGGGA CCTCGTTTGTAGCATTGCCGAGTTCATCAGGTCCGAAAAGCAGGCGATAAGCAACAGCTTAGATGACATGGAGGAATTCGACGATTACGACGAGAGAATG GCTGTGATTGGTACGACATCGTCCAACCTCGAAGGGATACAGTTACATGTGGAAGAAGATGAAGATGAAGATGAAGAAGAAGCAACATGTTCAAATGTGG TGGCTGGGAAATCTCCGGAGAGGATGCCAAGAAGGAGGAGGGTGAGGTTTATTGTACCGGAGAGCGTTGAAATCGACAGAGAGGCACAAGCGGAGGTTGA TGAACTGATGGAAGCTAGGGAGTCAGGGTTGGCGTTCATACTGGGGCATTCATACGTGAGGGCGAAAAGCGGTTCGAGTTTGATTAGGAAGTTCGTGATA AACTATGGGTATGATTGTTTGAGGAGGAACTCCAGGGGACCAAGTTATGGATTGTCCATTCCTTATGCATCTACATTAGAGGTGGGAATGGTGTATCATG TGTAG
AA sequence Show only first row Show all	>Lus10014531 pacid=23170895 polypeptide=Lus10014531 locus=Lus10014531.g ID=Lus10014531.BGIv1.0 annot-version=v1.0 MDIESTDLSRNPIKRESWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIKHSDTNEEIFGVLSFVVWTLTLIPLLKYVFIVLRADDNGEGGTFALYS LLCRHARVTTLPNCQLADEQLSEYNRDDGSRKGRRIGSGLKSALEKSRLLQKGLLVLALIGTSMVIGDGVLTPAISVSSAVSGMELSMAKEQHQYIKLPV TCAILVSLFALQHFGTHKVGFLFAPIVIVWLLCISSIGVYNIFYWNPLVYQALSPYYMYKFLKKTKKGGWMSLGGILLCMTGSEAMFADLGHFSQLSIQI AFTFVVYPSLILAYMGQAAYLSKHHILETDYRIGFYVSVPDCCFVLDLPVIKWTFILLCLAVTVGFRNTKHMANAAGLAVITVMLVTTCLMSLVIVLCWR KNTILALCFIFFFGSFELLYFSASLIKFLEGAWVPIALSFIFLAIMYIWHYGTLKKYESDVQNKVSINWLLSLGPTLGIVRVRGIGLIHTELVSGIPAMF SHFVTNLPAFHQVVVFLCVKSVPVPHVGPEERFLVGRVGPKEYRIYRCIARYGYHDVHKDDVEFERDLVCSIAEFIRSEKQAISNSLDDMEEFDDYDERM AVIGTTSSNLEGIQLHVEEDEDEDEEEATCSNVVAGKSPERMPRRRRVRFIVPESVEIDREAQAEVDELMEARESGLAFILGHSYVRAKSGSSLIRKFVI NYGYDCLRRNSRGPSYGLSIPYASTLEVGMVYHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	0	1
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	1.4	0.9332
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	1.4	0.9279
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	2.0	0.9031
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	3.0	0.9258
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	5.9	0.8838
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	6.3	0.8670
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	6.3	0.8749
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	6.6	0.8651
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	6.9	0.8848
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	7.2	0.8530

Compare expression of checked genes

Lus10014531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.