Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27810 213 / 3e-70 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 212 / 6e-70 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 202 / 3e-66 MYB ATMYB57 myb domain protein 57 (.1) AT1G48000 186 / 4e-59 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 183 / 1e-57 MYB AtMYB2 myb domain protein 2 (.1) AT1G68320 180 / 3e-56 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 179 / 8e-56 MYB ATMYB116 myb domain protein 116 (.1.2) AT5G49620 177 / 5e-55 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G06490 171 / 1e-52 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G24310 161 / 4e-49 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032129 [exp] 328 / 1e-115 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10022259 [exp] 230 / 2e-76 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10037818 [exp] 197 / 2e-62 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 194 / 7e-62 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 184 / 5e-58 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 183 / 2e-57 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10041435 [exp] 182 / 2e-56 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 180 / 1e-55 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 172 / 7e-54 AT1G68320 231 / 1e-75 myb domain protein 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346600 [exp] 218 / 2e-72 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.017G071500 [exp] 217 / 4e-72 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 200 / 1e-63 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 197 / 2e-62 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.012G055600 [exp] 186 / 2e-58 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 186 / 3e-58 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 182 / 8e-57 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 178 / 3e-55 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.014G117000 [exp] 167 / 4e-51 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 166 / 1e-50 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014557 pacid=23170937 polypeptide=Lus10014557 locus=Lus10014557.g ID=Lus10014557.BGIv1.0 annot-version=v1.0 ATGGAGTACAGAACCGAGCAGCCGCCAAAGGAAGCAGGAGGTGAAGGTATAATAAGGAAAGGGCCGTGGACGATGGAGGAAGACTTGATACTGATAAACT ATATCGCAAACCACGGCGAAGGTGTCTGGAACTCTCTGGCTCTTTCCGCGGGCCTGAAGCGTACTGGGAAGAGCTGCAGGCTGAGATGGTTGAATTACTT GCGTCCTGACGTTAGGAGAGGCAACATCACTCTCGAGGAGCAGATCCTCATCATGGATCTCCATTCCAAGTGGGGAAACAGGTGGTCGAAGATTGCAAAG CATCTTCCGGGAAGGACGGACAACGAGATAAAAAACTACTGGCGAACCAGGATCCAAAAGCATCTTAAGCAATCCGGATTACAGTCCTCGTCTCCTCCGG GTTCAGGGTCGGATCACCACCACCAGCTAGACACGAGTACTCACACAAGCCAACTCGTTTCGGGATACAACCACTACTACCATGGTGTTGATCATCATCC CATGGAGGCCACCATGGTCGGAGAGTGTTCCGGTTCCGGTTCGAACACGATGCAGTCGGACCAGCCGTCCTTTGAGGGACGTCACTGGAGCATGGAGGAG CTGTGGTCTATGGAGCTGTTCAATTCAGGATCCTAA
AA sequence Show only first row Show all	>Lus10014557 pacid=23170937 polypeptide=Lus10014557 locus=Lus10014557.g ID=Lus10014557.BGIv1.0 annot-version=v1.0 MEYRTEQPPKEAGGEGIIRKGPWTMEEDLILINYIANHGEGVWNSLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQILIMDLHSKWGNRWSKIAK HLPGRTDNEIKNYWRTRIQKHLKQSGLQSSSPPGSGSDHHHQLDTSTHTSQLVSGYNHYYHGVDHHPMEATMVGECSGSGSNTMQSDQPSFEGRHWSMEE LWSMELFNSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10014557 [exp]	0	1
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	4.7	0.9859
					Lus10022068 [exp]	5.2	0.9211
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	6.3	0.8083
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	6.6	0.9859
					Lus10022805 [exp]	8.1	0.9859
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	8.7	0.8173
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	9.4	0.9859
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	10.5	0.9859
					Lus10011962 [exp]	11.5	0.9859
					Lus10028673 [exp]	11.5	0.8637

Compare expression of checked genes

Lus10014557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.