Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14340 234 / 8e-77 MYB AtMYB40 myb domain protein 40 (.1) AT5G16600 219 / 3e-70 MYB ATMYB43 myb domain protein 43 (.1) AT1G66230 213 / 3e-68 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 204 / 5e-65 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 200 / 3e-63 MYB ATMYB42 myb domain protein 42 (.1) AT3G61250 191 / 1e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G02940 190 / 6e-59 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 188 / 7e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 186 / 1e-57 MYB ATMYB41 myb domain protein 41 (.1) AT5G15310 187 / 2e-57 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032117 [exp] 424 / 3e-151 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10004043 [exp] 212 / 6e-67 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10032226 [exp] 209 / 2e-66 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 209 / 2e-66 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10038913 [exp] 207 / 2e-66 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10027197 [exp] 207 / 2e-66 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10002296 [exp] 209 / 8e-66 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 204 / 8e-64 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10010974 [exp] 191 / 1e-60 AT5G16600 215 / 8e-70 myb domain protein 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336700 [exp] 251 / 4e-83 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 226 / 3e-73 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.004G086300 [exp] 216 / 8e-69 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.003G114100 [exp] 213 / 3e-68 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.001G118800 [exp] 212 / 5e-68 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.017G130300 [exp] 212 / 2e-67 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.012G127700 [exp] 201 / 1e-63 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 201 / 2e-63 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.002G157600 [exp] 189 / 1e-58 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118200 [exp] 189 / 6e-58 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014569 pacid=23170912 polypeptide=Lus10014569 locus=Lus10014569.g ID=Lus10014569.BGIv1.0 annot-version=v1.0 ATGGGAAGACAACCTTGTTGTGAAAAGGTTGGATTGAAGAGAGGTCCATGGACCATTGAGGAGGACCACATGCTCATGAACTTCATCTTCAACAATGGCA TCCATTGCTGGAGAATGGTCCCTAAGCTTGCAGGTTTGCTAAGGTGTGGGAAGAGTTGTAGGTTGAGATGGATTAATTACTTGAGGCCGGATCTTAAGAG AGGTGCTTTCACTGAAGCGGAGGAGAATCAGATGATTCAGCTCCATTGCCGCCTTGGAAACAGGTGGTCAAAGATTGCCTCGCATTTACCTGGAAGGACG GACAACGAGGTCAAGAATCATTGGAACACTAGGATCAAGAAGGAACTTAAGTTGGCCGGAGTAGACCCTGTCACCCACCAACCGATTCTCGATAACAAAA ACATAGAGGGTGGTGATCAGGATGATCAGAAGAAGCAGAAGTACTTAGAAGAGGAATTAGAATTATCAACGACGACAAAATTGGACGAAATTACAACTAT TAATGATGATCTAGTGAGGAGGGACTATCAAGTGTGTGGTGGGAGCAGCTTGGAGTACTTTGGGGGACACAATAAAAGTAGTAACACAAGTACTACTTCT CAAGGTTCAACAATATCATCATCGATCGAGGAGTCAAATTCGCATAATGACTACAATTACCATCGCGGTAATCATGAACCGGCATTAGTCTCGAACACTC AATTGGACGATTATGATACTATGAAACAATGGGTCGATGGGGTAGACTCATCAATGTTCTCTTGGGATGATGGTTTCATGAATGGTAACCTAGACGATGA TTTTTTCCTCCATGGGAAATGGGCACTGCTGTAA
AA sequence Show only first row Show all	>Lus10014569 pacid=23170912 polypeptide=Lus10014569 locus=Lus10014569.g ID=Lus10014569.BGIv1.0 annot-version=v1.0 MGRQPCCEKVGLKRGPWTIEEDHMLMNFIFNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEAEENQMIQLHCRLGNRWSKIASHLPGRT DNEVKNHWNTRIKKELKLAGVDPVTHQPILDNKNIEGGDQDDQKKQKYLEEELELSTTTKLDEITTINDDLVRRDYQVCGGSSLEYFGGHNKSSNTSTTS QGSTISSSIEESNSHNDYNYHRGNHEPALVSNTQLDDYDTMKQWVDGVDSSMFSWDDGFMNGNLDDDFFLHGKWALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	0	1
AT3G07425			unknown protein		Lus10009587 [exp]	3.3	0.9331
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	5.5	0.9326
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	5.9	0.9313
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	6.5	0.9323
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	9.8	0.9080
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	10.6	0.9315
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	11.2	0.9277
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	13.4	0.9221
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	19.9	0.9215
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	20.2	0.9006

Compare expression of checked genes

Lus10014569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.