Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40640 612 / 0 unknown protein AT3G27390 608 / 0 unknown protein AT4G12680 401 / 4e-132 unknown protein AT4G37030 350 / 2e-112 unknown protein AT5G14345 100 / 1e-24 AtENODL21 early nodulin-like protein 21 (.1) AT3G18590 84 / 2e-18 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 84 / 2e-18 AtENODL6 early nodulin-like protein 6 (.1) AT2G25060 70 / 1e-13 AtENODL14 early nodulin-like protein 14 (.1) AT1G79800 66 / 3e-12 AtENODL7 early nodulin-like protein 7 (.1) AT4G28365 66 / 4e-12 AtENODL3 early nodulin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032110 [exp] 957 / 0 AT3G27390 728 / 0.0 unknown protein Lus10022317 [exp] 789 / 0 AT3G27390 722 / 0.0 unknown protein Lus10014881 [exp] 472 / 2e-162 AT3G27390 380 / 3e-128 unknown protein Lus10016056 [exp] 406 / 7e-134 AT4G12680 749 / 0.0 unknown protein Lus10025177 [exp] 396 / 8e-130 AT4G12680 738 / 0.0 unknown protein Lus10011021 [exp] 380 / 1e-123 AT4G37030 698 / 0.0 unknown protein Lus10001003 [exp] 373 / 5e-121 AT4G37030 707 / 0.0 unknown protein Lus10032111 [exp] 177 / 1e-51 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10022318 [exp] 112 / 3e-28 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338900 [exp] 708 / 0 AT5G40640 718 / 0.0 unknown protein Potri.007G042400 [exp] 377 / 7e-123 AT4G37030 707 / 0.0 unknown protein Potri.007G035400 [exp] 366 / 7e-119 AT4G12680 411 / 9e-138 unknown protein Potri.014G170800 [exp] 363 / 2e-117 AT4G12680 685 / 0.0 unknown protein Potri.001G338800 [exp] 105 / 6e-26 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.015G052000 [exp] 86 / 4e-19 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.015G114600 [exp] 74 / 3e-15 AT5G14345 97 / 2e-26 early nodulin-like protein 21 (.1) Potri.018G018200 [exp] 72 / 2e-14 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 72 / 3e-14 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 69 / 3e-13 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10014575 pacid=23170896 polypeptide=Lus10014575 locus=Lus10014575.g ID=Lus10014575.BGIv1.0 annot-version=v1.0 ATGGAGCGTCCAAAGGGGTTCTTCGCTACTCTATTGTCATTCTTGCTGTTTCTCCCTTACTTCGTTGGGCTGCTCATTCTGGGTACCATTAAGGGTATCA TTATATGCCCAGTGATCTTCCTTTTCATGGTGATTGGAAACTTTGGTATCATATTGAGCCTTTGGCCATTTCATATCTATTGGACTTACTATTCCATTCT CAGATCTAAACAACTAGGACCGTTTCTGAAGCTTATTCTCTGCATTTGCTTACCTGGTGTCTTGCTTCTGTGGCTGGTGCTTGGCCTTGCTGGGAGCGTT GTGGGTGGAATATTGTACGGTCTGCTTTCACCGATATTTGCCACTTTTGATGCTATTGGAGAAGGGAAAAGCAACAAATTGTATCACTGCTTTTGTGACG GAACTATCGATACATTGAGAGGTTGTTTCACCATTGTCAGAGACTTTGGTGATGTGTGTTATCATTCTTACTCCTCGATTATGGATGACTTGCGACAGAA AGGGCCTGCAGATGGGAAGTACTACGATATCAGATTGCTTCAGCTTCCCGGTGCCCTCATTGCCGGTGCACTTGGCGTTCTGGTCGACTTCCCGATGGTC TCACTCGTAGCCTTATGCAAAAGCCCGTTCATGTTATTCAAAGGATGGCATCGCTTGTGTCATGACCTTTACGGTAGAGAAGGCCCTTTCTTGGAGACGA TCTGCGTGCCATTTGCCGGTCTTGCGATCTTGCTGTGGCCATTGGCTGTTGTGGGAGCAGTGTTGGGATCGATGGTCTCAAGCATCTTTCTCGGTGCTTA TGCAGCTGTTGTTTCTTATCAGGAGTCCTCTTTTTGGTTGGGACTTCGTTACATCGCTGCATCTTTAGCCATCTATGATGAGTACAGCAATGATGTTCTT GACTTGCCAGAAGGATCTTGCTTTCCCAGGCCAAAGTACAGGAAAAACTCTGAGGGCAGTTCCCGCTCATCCTCTTTTACAAGACCTACTTCATCTTTCA GGAAATCTTTCTCGCGCTCCATTTCAATCGCTGGCCCTATAGTTGACGTGAAACCATTTGAGCTTCTTGAAAGCTTGTTTAAGGATTGTCAAGTCCACGG AGAGAAATTTCTGTCTCACGGACTTATAACTCAACAAGACATCGATGATGCCAAGTCTGGTAATGGCAGTAGAGTGATCAGCACAGGGTTACCAGCTTAT TGCCTTCTTCAAGATCTATTGAGATCCGCGAAGGCCAATTCGGACGGCATTTTGCTAAGTGATAATGTCACTGAGATAACAAGCACAAACAGGCCGAGAG ATGCCTTTTTCGACTGGTTTCTTAATCCATTTCTGATCATCAAAGACCAGCTCAAAGCCCAGAACCTTTCCCAGTCTGAAGAAGACTACCTTTGCAAATT AGTGCTGTTGAATGGTGATCCCGTCAAGATGAAAGCTTCAACGATCGGCCCTCTACCCGAGACCGAACGCAAACGAGCTGAACTCGATGCATTAGCTAGA AGGCTTCAAGGCATTGTGAAGTCAATCTCGAGGTTCCCAACAGCAAGGAGGAACTACCAAAACCTCGTCAACAACCTTTCCGATAACCTTGCCCGGAAGA ATGGCAATGGCCGGAAGAATTTTTCGCGATCGAAGAGCGCATTTGCTAGGATCTTCAGCCAGAGGTCTATGAATGGGAAGACCAGCTTCAATCACAGGTT TAGGTACAAGAAGGACTGGGTTATGGAGGTGAACGAGGAAGGGTACAAGAGCTGCAACTCCAGCCATCCAAACTACTTCTCAAACACTGGAAACATGGTC TACGAGCTGGATCATTCGGGCCCGTACTACTTCATCAGTGGCGCTTCTCACCACTGTGACAAAGGGCAGAAGATGATCATCAAGGTCTTGAGTCATGAAG ACGATGGCAATGGAAATAGCAGCAGCAACTCTCCCCCCTCCCATGACGGTGAAGGTGGCCACGGCAAGTCAGCAGCTGGTGTAACTCTTCCTTCTTCAGT TTTGGCCATGGCTTTAGCAACTCTTGCTGCTTCCATCTACTATTAG
AA sequence Show only first row Show all	>Lus10014575 pacid=23170896 polypeptide=Lus10014575 locus=Lus10014575.g ID=Lus10014575.BGIv1.0 annot-version=v1.0 MERPKGFFATLLSFLLFLPYFVGLLILGTIKGIIICPVIFLFMVIGNFGIILSLWPFHIYWTYYSILRSKQLGPFLKLILCICLPGVLLLWLVLGLAGSV VGGILYGLLSPIFATFDAIGEGKSNKLYHCFCDGTIDTLRGCFTIVRDFGDVCYHSYSSIMDDLRQKGPADGKYYDIRLLQLPGALIAGALGVLVDFPMV SLVALCKSPFMLFKGWHRLCHDLYGREGPFLETICVPFAGLAILLWPLAVVGAVLGSMVSSIFLGAYAAVVSYQESSFWLGLRYIAASLAIYDEYSNDVL DLPEGSCFPRPKYRKNSEGSSRSSSFTRPTSSFRKSFSRSISIAGPIVDVKPFELLESLFKDCQVHGEKFLSHGLITQQDIDDAKSGNGSRVISTGLPAY CLLQDLLRSAKANSDGILLSDNVTEITSTNRPRDAFFDWFLNPFLIIKDQLKAQNLSQSEEDYLCKLVLLNGDPVKMKASTIGPLPETERKRAELDALAR RLQGIVKSISRFPTARRNYQNLVNNLSDNLARKNGNGRKNFSRSKSAFARIFSQRSMNGKTSFNHRFRYKKDWVMEVNEEGYKSCNSSHPNYFSNTGNMV YELDHSGPYYFISGASHHCDKGQKMIIKVLSHEDDGNGNSSSNSPPSHDGEGGHGKSAAGVTLPSSVLAMALATLAASIYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40640			unknown protein		Lus10014575 [exp]	0	1
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	1.7	0.8928
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10011307 [exp]	3.5	0.8638
AT5G02440			unknown protein		Lus10024400 [exp]	3.5	0.8760
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	3.6	0.8537
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	5.7	0.8915
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	7.7	0.8511
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	8.5	0.8760
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	17.9	0.8535
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	17.9	0.8477
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	20.5	0.8388

Compare expression of checked genes

Lus10014575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.