Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72890 187 / 4e-56 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G27170 187 / 2e-53 transmembrane receptors;ATP binding (.1.2) AT1G17615 177 / 6e-53 Disease resistance protein (TIR-NBS class) (.1) AT1G72900 174 / 5e-52 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G27180 182 / 2e-51 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 181 / 4e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72950 172 / 4e-51 Disease resistance protein (TIR-NBS class) (.1) AT1G72940 172 / 5e-51 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G46490 168 / 1e-49 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G66090 169 / 2e-49 Disease resistance protein (TIR-NBS class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032101 [exp] 508 / 0 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10015453 [exp] 479 / 1e-169 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10008027 [exp] 301 / 5e-102 AT5G36930 197 / 5e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018309 [exp] 303 / 3e-101 AT1G27180 245 / 1e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 316 / 3e-99 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 308 / 1e-95 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 308 / 1e-95 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 308 / 2e-95 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 306 / 4e-95 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 251 / 1e-79 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 248 / 5e-79 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 249 / 7e-79 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 257 / 1e-78 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 249 / 3e-78 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 252 / 4e-76 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 251 / 5e-76 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 251 / 7e-76 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 249 / 8e-76 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 250 / 1e-75 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014582 pacid=23170858 polypeptide=Lus10014582 locus=Lus10014582.g ID=Lus10014582.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAAATGATATCATGGTGGTGGTGGCTTTGGCCTCTCTCGGCGGCGGTCGCATTCAGTCTCCCCTTACTAATTCTCTTCTTCTCCAAACAAT TATCTTCATCGCAATCGTCTGATGAAGTCCCATCTCCTTCACATTCAGATCTCCCCGTAGGCGAATATGAAGTGTTCCTGAGCTTCCGAGGTCCAGACAC CCGCCTGACCTTCACCGATTTCCTCTACACCTACCTCGTCCAAGCCAAAATCCGCACTTTCAGGGACGACGACGAGCTCCGCAAAGGCGGCACCATCGGC CCTGAGCTCATCAAGGCCATTCAAGAGTCCAAGATTGGGATCCCTATCTTCTCCCCAAACTACGCCTCCAGCAAATGGTGCCTCCAAGAGCTCGCCAACA TGGTTGACTGCAAGAGAAACAAAGGCCAGATCATTCTTCCCGTCTTCTACTACGTCGACCCTACCGACGTCCGTCATCAGACGGGAACTTACAAACATGC GTTCCAACAGCACGATAAGAAATTCAGCAAGGAGACTGTAGATCAATGGAGGTCTGGTTTGGCTGAGGTTGGCGCTTTGAAAGGATGGGTTGTCAAGGAT TCTAATGGGCAAGGAGCTACAATAGAGAACGTTTGCTCAGCGATATGGTCAGCACTGAGGAGCGAGTACTTGCTAGTCACTGATGCTTTGGTTGGAATCG ATCATCACGTAGACGAAATGATGAAACTTCTGGATCCGGAAGACTCCATTAACGAGGTGAAAATTGTCGGAATCCACGGTGTGGCTGGGATCGGCAAGAC CACCATAGCCAAGGCAGTCTACAACAAGCTCTTTCACAAGTTCGACCATTGCTGCTTTCTTGAAGACGTACGCGAAACGTCACAAGAACTCGGTGGCATC GTCAGGTTGTAA
AA sequence Show only first row Show all	>Lus10014582 pacid=23170858 polypeptide=Lus10014582 locus=Lus10014582.g ID=Lus10014582.BGIv1.0 annot-version=v1.0 MEQQMISWWWWLWPLSAAVAFSLPLLILFFSKQLSSSQSSDEVPSPSHSDLPVGEYEVFLSFRGPDTRLTFTDFLYTYLVQAKIRTFRDDDELRKGGTIG PELIKAIQESKIGIPIFSPNYASSKWCLQELANMVDCKRNKGQIILPVFYYVDPTDVRHQTGTYKHAFQQHDKKFSKETVDQWRSGLAEVGALKGWVVKD SNGQGATIENVCSAIWSALRSEYLLVTDALVGIDHHVDEMMKLLDPEDSINEVKIVGIHGVAGIGKTTIAKAVYNKLFHKFDHCCFLEDVRETSQELGGI VRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10014582 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	9.2	0.6753
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	23.1	0.6289
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	28.6	0.6236
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	35.1	0.5849
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	51.2	0.5850
AT3G51560			Disease resistance protein (TI...		Lus10014583 [exp]	61.7	0.5587
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	77.1	0.5949
AT5G05190			Protein of unknown function (D...		Lus10012863 [exp]	117.1	0.5490
AT3G01720			unknown protein		Lus10014878 [exp]	129.7	0.5559
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	139.9	0.5629

Compare expression of checked genes

Lus10014582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.