Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 702 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 664 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 655 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 642 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 564 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 555 / 0 Transmembrane amino acid transporter family protein (.1) AT1G25530 501 / 1e-176 Transmembrane amino acid transporter family protein (.1) AT1G71680 470 / 2e-164 Transmembrane amino acid transporter family protein (.1) AT1G47670 263 / 1e-82 Transmembrane amino acid transporter family protein (.1) AT4G35180 212 / 2e-63 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022329 [exp] 730 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 729 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 692 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 585 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 528 / 0 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 495 / 5e-174 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 489 / 3e-170 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 480 / 4e-169 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 414 / 8e-144 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335300 [exp] 721 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 700 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 652 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 640 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 619 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 523 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 521 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 277 / 9e-88 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 273 / 5e-86 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 249 / 8e-77 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10014605 pacid=23170862 polypeptide=Lus10014605 locus=Lus10014605.g ID=Lus10014605.BGIv1.0 annot-version=v1.0 ATGGCGGGTTCTGAAATCAACCAAGCTTCAACTGGCAACCAGAATAATACTCAGAAGGAAATTGACCAGAAAGCAATTGATGACTGGCTACCAATTACTG GATCAAGGAATGCAAAATGGTGGTTTTCAGCTTTCCACAATGTAACCGCCATGGTTGGAGCTGGTGTCCTCAGTCTCCCTTATGCCATGGCACAGCTCGG ATGGGGTCCTGGTGTTGCAATCATGGTCCTGTCATGGATCATAACCCTATACACACTCTGGCAGATGGTCGAGATGCACGAAATGGTCCCTGGAAAGCGT TTCGATCGCTACCACGAACTGGGCCAGCATGCTTTCGGAGAAAAGCTCGGACTTTACATAGTGGTCCCACAGCAGCTGATCGTCGAAGTCGGAGTATGCA TAGTATACATGGTCACAGGAGGAAGATCACTACAAAAAGTCCATGATCTCGTATCCAAAGATGGCAAGGAGATCAAGCTAACATTTTTCATAATGATTTT CGCCTCGGTCCACTTCATTCTCTCCCATCTCCCAAACTTCAACTCGATCTCCGGAGTTTCCCTCGCAGCTGCTGTAATGTCGTTGAGTTACTCGACCATT GCTTGGGCCACTTCGATCAAAAAGGGTGTCCAGCCGGATGTTTCGTATGGTTTCAAGGCTACGACGAGGACTGGAATTGTGTTCAATTTCTTGAGTGCAC TGGGGGATGTGGCGTTTGCATATGCAGGACACAATGTGGTGTTGGAGATTCAAGCTACGATACCTTCCACGCCTGAGAAGCCATCGAAGATTGCAATGTG GAGGGGTGTCCTTGTGGCTTATGGAGTTGTGGCGTTGTGTTACTTCCCGGTCGCGTTTATTGGTTACTATACGTTTGGGAATAATGTGGAGGACAACATC CTTATCTCGTTGGAGAATCCTGTCTGGCTCATTGTTCTGGCCAATATGTTTGTTGTCGTCCATGTCATCGGTAGCTACCAGATCTATGCAATGCCTGTGT TTGATATGATAGAAACCGTGTTGGTCAAGAGGCTCTATTTCAGGCCGACCAAGGTCCTTAGGTTCTGCGTTCGCAACTTATACGTTGCAATAACAATGTT CATTGCCATCACATTCCCATTCTTCGGAGGGCTACTTGGTTTCTTTGGAGGGTTTGCTTTTGCCCCAACAACATACTTTCTTCCTTGCGTGATGTGGCTT TGCATCTACAAGCCGAAGAGGTTCAGCTTATCGTGGTGGACTAACTGGATCTGCATTGTGCTGGGAATGATTCTGATGATTGTCTCGCCGATTGGTGGGT TGCGCACGATCATCATTCAAGCGAAGGAGTACCATTTCTACACTTGA
AA sequence Show only first row Show all	>Lus10014605 pacid=23170862 polypeptide=Lus10014605 locus=Lus10014605.g ID=Lus10014605.BGIv1.0 annot-version=v1.0 MAGSEINQASTGNQNNTQKEIDQKAIDDWLPITGSRNAKWWFSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAIMVLSWIITLYTLWQMVEMHEMVPGKR FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGRSLQKVHDLVSKDGKEIKLTFFIMIFASVHFILSHLPNFNSISGVSLAAAVMSLSYSTI AWATSIKKGVQPDVSYGFKATTRTGIVFNFLSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWRGVLVAYGVVALCYFPVAFIGYYTFGNNVEDNI LISLENPVWLIVLANMFVVVHVIGSYQIYAMPVFDMIETVLVKRLYFRPTKVLRFCVRNLYVAITMFIAITFPFFGGLLGFFGGFAFAPTTYFLPCVMWL CIYKPKRFSLSWWTNWICIVLGMILMIVSPIGGLRTIIIQAKEYHFYT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	3.7	0.7431
					Lus10008440 [exp]	5.8	0.7914
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	8.1	0.7628
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	8.8	0.7897
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	9.2	0.7558
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	10.6	0.7609
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	11.5	0.6914
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	13.4	0.7247
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	13.6	0.7531
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	14.7	0.7405

Compare expression of checked genes

Lus10014605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.