Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 703 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 681 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 665 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 637 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 550 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 549 / 0 Transmembrane amino acid transporter family protein (.1) AT1G25530 515 / 0 Transmembrane amino acid transporter family protein (.1) AT1G71680 476 / 2e-166 Transmembrane amino acid transporter family protein (.1) AT1G47670 286 / 3e-91 Transmembrane amino acid transporter family protein (.1) AT4G35180 217 / 3e-65 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041581 [exp] 713 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 712 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 692 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 657 / 0 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 629 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 509 / 2e-179 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 496 / 6e-173 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034283 [exp] 424 / 1e-147 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 395 / 8e-136 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335200 [exp] 749 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 712 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 657 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 657 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 621 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 531 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 528 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 294 / 2e-94 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 276 / 3e-87 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 259 / 9e-81 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10014606 pacid=23170900 polypeptide=Lus10014606 locus=Lus10014606.g ID=Lus10014606.BGIv1.0 annot-version=v1.0 ATGGGAACTCAAACAACATATGAAGATCAGAAACCCGAAGCTCAGAAACCCGAAGATCCCCACTATGAAGAGGATCTGAAGAAGAAGCAGATTGATGATT GGCTTCCAATCACTGGTTCCAGGAATGACAAATGGTGGTACGCTGCCTTTCACAATGTTACTGCCATGGTGGGAGCTGGTGTACTCAGCCTCCCATATGC TATGTCTCACCTTGGCTGGGGACCTGGGACAGTAATTTTGGTGCTGTCATGGGTGATCACTCTGTACACGCTATGGCAAATGGTTGAGATGCATGAGATG GTACCTGGAAAGCGATTCGATCGGTACCATGAGCTTGGTCAGCATGCCTTCGGTGAAAAGCTTGGCCTCTACATCGTGGTGCCTCAGCAACTCATCTGTG AAGTTGGTGTGGATATCGTCTACATGGTTACAGGAGGAAAATCGATAGAGAAGATCCATAAATTGCTCTGCAAGGACTGCAGCCATATCAAAACAAGTTA CTTCATCATGATCTTTGCATCTGTCCACTTCGTCCTTGCTCATCTGCCCAACTTCAATTCCATCTCTGGTGTCTCTTTGGCTGCTGCGGTCATGTCTCTG AGTTACTCTACCATTGCCTGGGCAGCATCCATTCAGAAAGGCCGTCAACCAGATGTGGACTACGGGTCTGTAGCCTCTACAACAACAGGATCAACTTTCA ACTTCTTGACTGCTCTGGGAGATGTAGCGTTTGCCTATGCTGGGCATAACGTGGTGCTGGAGATTCAAGCAACAATCCCTTCTACACCCGAGAAGCCATC AAAAGGACCAATGTGGAGAGGAGTTGTCATAGCATATATAGTTGTGGCCTTGTGTTATTTCCCAGTCGCCCTGGTTGGGTATTACGTGTTTGGTAACAAA GTCGAAGACAACATCCTCATCTCCTTAGAGAAACCCACATGGCTCATTGTGATGGCTAATGCATTTGTCATCATCCACGTTATTGGTAGCTATCAGTTGT ATGCGATGCCTGTCTTCGACATGATAGAGACTGTCTTGGTGAAGAAACTGAACTTTACACCAAGTGTCATGCTACGATTCATCACTCGCAACCTATACGT TGCATTCACAATGTTCGTGGCTATCACATTCCCTTTCTTTGGTGGTTTGCTTGGTTTCTTTGGAGGATTCGCATTTGCTCCGACGACGTACTTTCTCCCT TGCATCATGTGGCTTGCCATCTACAAACCAAAGAAGTTCAGCCTGTCCTGGATAGCCAACTGGATTTGCATCACACTTGGGTTGTTGCTGATGATATTGT CACCCATAGGAGGGTTAAGGAATATCATCCTAAATGCAAAAGACTACAAGTTCTACAATTAG
AA sequence Show only first row Show all	>Lus10014606 pacid=23170900 polypeptide=Lus10014606 locus=Lus10014606.g ID=Lus10014606.BGIv1.0 annot-version=v1.0 MGTQTTYEDQKPEAQKPEDPHYEEDLKKKQIDDWLPITGSRNDKWWYAAFHNVTAMVGAGVLSLPYAMSHLGWGPGTVILVLSWVITLYTLWQMVEMHEM VPGKRFDRYHELGQHAFGEKLGLYIVVPQQLICEVGVDIVYMVTGGKSIEKIHKLLCKDCSHIKTSYFIMIFASVHFVLAHLPNFNSISGVSLAAAVMSL SYSTIAWAASIQKGRQPDVDYGSVASTTTGSTFNFLTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVIAYIVVALCYFPVALVGYYVFGNK VEDNILISLEKPTWLIVMANAFVIIHVIGSYQLYAMPVFDMIETVLVKKLNFTPSVMLRFITRNLYVAFTMFVAITFPFFGGLLGFFGGFAFAPTTYFLP CIMWLAIYKPKKFSLSWIANWICITLGLLLMILSPIGGLRNIILNAKDYKFYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	1.0	0.9835
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	2.0	0.9737
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	2.0	0.9604
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	2.4	0.9708
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	3.2	0.9564
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	3.5	0.9537
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	3.7	0.9451
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	4.0	0.9434
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	4.5	0.9332
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	5.5	0.8904

Compare expression of checked genes

Lus10014606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.