Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15340 634 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 413 / 4e-131 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 367 / 1e-114 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 357 / 3e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 341 / 3e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 341 / 2e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 337 / 5e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 335 / 7e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 337 / 3e-102 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 330 / 1e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033775 [exp] 1629 / 0 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 394 / 1e-123 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 390 / 3e-122 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 373 / 3e-117 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 366 / 4e-114 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 366 / 4e-114 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 355 / 2e-110 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 357 / 1e-109 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 353 / 2e-109 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087600 [exp] 790 / 0 AT5G15340 754 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 409 / 2e-129 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 402 / 6e-127 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 382 / 9e-121 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 384 / 2e-120 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 371 / 2e-114 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 359 / 7e-112 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 359 / 9e-111 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 353 / 9e-110 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 355 / 3e-109 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014653 pacid=23149637 polypeptide=Lus10014653 locus=Lus10014653.g ID=Lus10014653.BGIv1.0 annot-version=v1.0 ATGGGTGCGCCCAAACAGAAGTGGACAGCAGATGAAGAAGCAGCACTTAAAGCAGGAGTGATTAAGCATGGTGCTGGGAAATGGCGAACAATACTTAAGG ATCCTGAATATAGTGGTATCTTATACTTACGATCGAATGTGGATCTCAAGGACAAATGGAGAAATATGAGTGTTATGGCTCATGGATGGACCTCTAGGGA GAAGTCTAAGTTGGTCACTAAAAGGGTTCACAATGTACTAAAACAGGAAGAGAGTCCTGTGACCACTGGTAATAATGTTAAAAGTGATGAAGATGTTGTG GATATCAGGCCTCCTGAAGCTGCTGTCCCTTTGATGCAAATCCCTGCTCCTATAAGATCTGCCATACGTTCTGCACTCTACAGAGGTTCCATGTTTGGTA GATCTCCTCCTATGAAATGCGTCAGTCAGCTCTTTCCCCCAAGCCATCTGCGCTCTCTTCTTCGGTCATGTGCACGCCAATCGTCTCTCTCTGCTGGGAA GCAGCTTCATGCAGTAATCCTTACTTCCGGCCTACGTGGGTCCTCAAATTCATTCCTTATGAACGCCCTTCTTCACTTGTACTCGTCTTGTGGAGTTCTC AATTATGCCCGCCGTTTGTTCAATCAAATTCCGCACTCTCACAAAGACACTGCAGATTGGACTTCTCTCTTGAGTTGTCTTTCACAAAACGAAAAAAATC CTTTTGAAAGCTATTCATTGTTCGGTGAAATGCGGAGAAAGAATGTTATTGTTGATGATGTTGTGCTGCTTTGCATGCTTGGTTTGTGTGCTCGGGTGGG AGATTTCAAGATGGGAACTCAATTGCATGGATGTATGGTGAAGATGGGTTTCAGGCACAGTGTTAAGACTTGTAATGCGATGATGAATATGCATGTGAAA TGTGGATTACTTGTGGACGCAAGGAGAATTTTTTGTGAAATGAATGAACCTAATGTGGTGTCGTGGAGTATACTGTTGGAAGGGGTGATAAAGTGGGAAG GGGTACAAAAGGGGATGGAGTTGTTTGATGCAATGCCTGAGAGGAATGAAGTTGGATGGACTATAATGATTGCAGGTTGTGTTGAGAGTGGGTTTATCAA GCAAGGGTATAAGCTTTTGAATGAAATGGTTTTTTTGTCAAGCTTTAGGTTGAATTATGTTTCCCTATGTTCTATTTTATCAGCTTCCGCACAATCCGGT GATGTAGCAATTGGGAGGTGGGTTCATGTTTTTGCTTTGAAGGAAGGGGATTTAAATTTCATGGTTGGGACAGCTTTGGTGGACATGTATGCTAAATGTG GTCGAATAAAAATGGCAATAAAAGTGTTTGATAATTTACCTAGGAGGAATGTAGTGACATGGAATGCGATGCTTGGTGGTTTAGCCATGCATGGGAAGGG AAACACCGTGTTGGAGTTGTTCAATAAGATGTTCAAAGAAGTTTCACCTGATGATTTGACCTTTATTGCTGTGCTTAGTGCCTGTAGTCATGCTGGTTTG GTGGATCAAGGTCGGAAGTATTTTCTTAATCTTCAATCAGAGTATGGAATAATACCAAAAATAGATCACTATGCTTGTATGGTTGATTTGCTTGGACGAG CTGGTCATTTAGAGGAAGCTGAACTTTTAATAGGGAATATGCCGATGCCACCAAATGAGGTTGTCCTAGGATCTCTTCTGGGTTCTTGCAACACTCATGG GAAGTTGAAGCTTGGTGAGAAGATTCTACAAGATCTGGCTGAGATGGATCCACATAACACTGAGTACCATATATTACTATCCAATATCTATGCTTTATCA GGAAGGCTGAAACAAGCTAATTCTTTACGGGATGGCCTTGCTTCTAGGGGGATTAGGAAGATCCCTGGAATCAGCTCTATTCATGTAGGGGGGCATATTC ATCAGTTTACTGCTGGTGATAAGTCACACGCTAGAACTTCAGAGATCTACCATACCCTGGATGGTATGGTAATTAGGTTGAGGCTTGCTGGTTATGTCCC ACATACCGCCTCACAGGTTTTCTCAGGTAGCGATGGCAGTAATAACATAGAGGAGAAGGAGCAAGCACTTTTATTGCACAGTGAGAAGCTTGCATTCTGT TTTGGGCTCATAAGCACAAGGCCTGTCACTGTACAGAGAAGTGCCTTGCAATATGTGACAACTGAGTCCCACTCGAGCTCATCAAAGTTTAGTGAGGGCG GTGTGGAATGGAATCAGATATGGCTGGATAATCTTATAATGGAGGCTATTACCACGTTGATGGAGCCTGATGGTTCGAATAAGACTGCAATTGCTTCGTA CATAGAGGAACAATATTGGCCACCTCAAGATTTCAAGAGGTTATTGTCAGAAAAACTTAAGCATCTGACTTCATGTGGTAAACTAATCAAGGTGAAACGG AAATACAGAATAGCAGCTACGCCATTTGCAAACAGGAAGAGGAGTGCTTGCATTTTACTGCAGGATGGAAGACCGAGGGCGTTTGAAACAGCTGTGCGGG AGGATTTGAAAATGCCTACAAAAGCACAAGTTGATGTGGAAGTATCCAAGATGAGAAGACTGAGTGCACAAGCGGCGGAAGCTGTGGCTGCCAGAGCAGT TGCGGAGGCAGATGCTGCTATAGCAGAAGCAGATGAGGCTGCAAGGGATGCAGAGGCTGCGGAAGCAGACGCCGAAGCTGCAGTGGCATATGCAGAAGCA GTTATGAAGACCACCAAGGGGAGGAACAATGCAAAGACGGTCCCTGCAAAACTTGGGATCAACTTGAGATTGATTGAAGGTCTAATAGACCGAAAAAGAA CCGAATGGTGCAGTCCGGCAGTCTGCAGCGTTGCCGGATGTACAATGACAATTGTTGCAGGATGTACGACGATATTAATCGCTTGTCACAACAACCGTAG TGAAGATGGCATAACAACAAAGAGGAACACAACAACTGTTAAGTTTCATTCAAAACCCCCATTATGA
AA sequence Show only first row Show all	>Lus10014653 pacid=23149637 polypeptide=Lus10014653 locus=Lus10014653.g ID=Lus10014653.BGIv1.0 annot-version=v1.0 MGAPKQKWTADEEAALKAGVIKHGAGKWRTILKDPEYSGILYLRSNVDLKDKWRNMSVMAHGWTSREKSKLVTKRVHNVLKQEESPVTTGNNVKSDEDVV DIRPPEAAVPLMQIPAPIRSAIRSALYRGSMFGRSPPMKCVSQLFPPSHLRSLLRSCARQSSLSAGKQLHAVILTSGLRGSSNSFLMNALLHLYSSCGVL NYARRLFNQIPHSHKDTADWTSLLSCLSQNEKNPFESYSLFGEMRRKNVIVDDVVLLCMLGLCARVGDFKMGTQLHGCMVKMGFRHSVKTCNAMMNMHVK CGLLVDARRIFCEMNEPNVVSWSILLEGVIKWEGVQKGMELFDAMPERNEVGWTIMIAGCVESGFIKQGYKLLNEMVFLSSFRLNYVSLCSILSASAQSG DVAIGRWVHVFALKEGDLNFMVGTALVDMYAKCGRIKMAIKVFDNLPRRNVVTWNAMLGGLAMHGKGNTVLELFNKMFKEVSPDDLTFIAVLSACSHAGL VDQGRKYFLNLQSEYGIIPKIDHYACMVDLLGRAGHLEEAELLIGNMPMPPNEVVLGSLLGSCNTHGKLKLGEKILQDLAEMDPHNTEYHILLSNIYALS GRLKQANSLRDGLASRGIRKIPGISSIHVGGHIHQFTAGDKSHARTSEIYHTLDGMVIRLRLAGYVPHTASQVFSGSDGSNNIEEKEQALLLHSEKLAFC FGLISTRPVTVQRSALQYVTTESHSSSSKFSEGGVEWNQIWLDNLIMEAITTLMEPDGSNKTAIASYIEEQYWPPQDFKRLLSEKLKHLTSCGKLIKVKR KYRIAATPFANRKRSACILLQDGRPRAFETAVREDLKMPTKAQVDVEVSKMRRLSAQAAEAVAARAVAEADAAIAEADEAARDAEAAEADAEAAVAYAEA VMKTTKGRNNAKTVPAKLGINLRLIEGLIDRKRTEWCSPAVCSVAGCTMTIVAGCTTILIACHNNRSEDGITTKRNTTTVKFHSKPPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	0	1
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	2.8	0.8947
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	4.2	0.9019
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	4.5	0.9174
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	4.9	0.9003
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	6.0	0.9002
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	6.0	0.8943
AT3G47630			unknown protein		Lus10023597 [exp]	6.3	0.9001
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	6.6	0.8890
AT1G73020			unknown protein		Lus10009732 [exp]	7.3	0.8988
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	7.5	0.8965

Compare expression of checked genes

Lus10014653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.