Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 142 / 5e-42 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 114 / 7e-31 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 110 / 3e-29 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT3G23220 79 / 2e-18 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT4G18450 82 / 3e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17500 81 / 4e-18 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 80 / 1e-17 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G51190 79 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23230 77 / 2e-17 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT1G04370 74 / 1e-16 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006579 [exp] 291 / 4e-100 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10022015 [exp] 144 / 1e-42 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10011829 [exp] 132 / 2e-37 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10021193 [exp] 131 / 2e-37 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10042557 [exp] 123 / 9e-35 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10027469 [exp] 114 / 4e-31 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10003562 [exp] 113 / 3e-30 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10033885 [exp] 111 / 2e-29 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10022935 [exp] 104 / 3e-26 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014409 [exp] 157 / 2e-47 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.013G045200 [exp] 156 / 3e-47 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.010G072300 [exp] 135 / 5e-39 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.005G223200 [exp] 134 / 2e-38 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 133 / 3e-38 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.008G166200 [exp] 127 / 6e-36 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.002G039000 [exp] 111 / 1e-29 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.005G223300 [exp] 110 / 4e-29 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.011G061700 [exp] 96 / 3e-24 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 92 / 7e-23 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10014655 pacid=23165670 polypeptide=Lus10014655 locus=Lus10014655.g ID=Lus10014655.BGIv1.0 annot-version=v1.0 ATGAATCAACACAGTTACTTCAACTATCAAAACACATGTGATCAGTTCTCTTTACAATACTCTTCTCAATATTCCAACAGAGTCCTCCCTTTCAATGAAA ATGATTCTGAAAAAATGCTTCTCTATGGAGTCATCAACCAATCCTCCTCCTTTTCATCGCTCTCTTCCTCTATTGTTGGAATGTCATCTCCTTCCTCGCC TTCCTCCTCGCAGCTTTCCTCGCCTGACCACGAGGAAACTACATACAGGGGAGTGAGGAAGAGGCCGTGGGGGAAGTATGCAGCTGAGATAAGAGACTCG ACTAGAAACGGGGTCAGGGTGTGGCTTGGAACGTTTAACACAGCGGAGGAAGCTGCCTTGGCCTACGATCAGGCGGCGTTCGCGCTGCGTGGTTCGATGG CCGTGTTGAATTTTTCTATAGATACGGTTGCCAAGTCGTTACAAAAAATAGGGTACCATTTTGAGGAAGGATCGTCACCGGTGATGGCGTTAAAGAAGAG ACATTCGGCTAGGAGGAAGGCAGAGAACGGGAGGAGGAAGAAAGAGAAGGCGACGACAGGGATGAATGATGGGGAAGGGATGGTGGTGCTAGAGGATTTG GGAGAGGAGTATTTGGAGGAAATTATGGAAATCTCGGAAAGAAGTAGTGATCATCATATGACTAGCAGTAGTGCTACTATTAGTGACAGTTATGGAACTG TTGCTAGTGGTTACATTAATCATGGCTACTACTGGTGA
AA sequence Show only first row Show all	>Lus10014655 pacid=23165670 polypeptide=Lus10014655 locus=Lus10014655.g ID=Lus10014655.BGIv1.0 annot-version=v1.0 MNQHSYFNYQNTCDQFSLQYSSQYSNRVLPFNENDSEKMLLYGVINQSSSFSSLSSSIVGMSSPSSPSSSQLSSPDHEETTYRGVRKRPWGKYAAEIRDS TRNGVRVWLGTFNTAEEAALAYDQAAFALRGSMAVLNFSIDTVAKSLQKIGYHFEEGSSPVMALKKRHSARRKAENGRRKKEKATTGMNDGEGMVVLEDL GEEYLEEIMEISERSSDHHMTSSSATISDSYGTVASGYINHGYYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	2.0	0.7644
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	3.3	0.6825
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	7.9	0.7428
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	8.1	0.7335
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	20.1	0.6760
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	21.8	0.6764
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	25.4	0.6618
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	27.8	0.6522
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	32.2	0.6811
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10029511 [exp]	34.0	0.5968

Compare expression of checked genes

Lus10014655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.