Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 348 / 6e-121 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 327 / 1e-112 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 318 / 5e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 184 / 2e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 181 / 5e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 174 / 2e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 61 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55290 61 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 61 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 60 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014689 [exp] 539 / 0 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 532 / 0 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 518 / 0 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 493 / 4e-178 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 403 / 7e-142 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 389 / 6e-137 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 377 / 5e-132 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 369 / 9e-129 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 270 / 1e-89 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 369 / 3e-129 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 343 / 1e-118 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 341 / 6e-118 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 337 / 2e-116 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 336 / 6e-116 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 320 / 2e-109 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 305 / 7e-104 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 286 / 1e-96 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 281 / 7e-94 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 215 / 7e-70 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014688 pacid=23165655 polypeptide=Lus10014688 locus=Lus10014688.g ID=Lus10014688.BGIv1.0 annot-version=v1.0 ATGGCAAAGAGGTATGCAGTGGTAACGGGAGGGAACAAAGGGATTGGGTATGAGATTTGCAGGCAGCTGGCATCCAATGGGATCGTCGTCGTATTGACCG CCAGAGACAGAGATAGAGGTCTCCAAGCTGTTGGTCAACTCGTAAACGACGACCCTGCTCTCTCCGACAACATCCTCTTCCAACAACTTGATGTCACCGA CCCATCCAGTATTTCCTCTCTGGCTGATTTCGTCAAAACCCAGTTCGGAAAACTCGACATACTTGTGAACAACGCTGGAATTCTCGGAGCCATCTGGCGC GAAGATGTCCTGAAATCTGTATCCTATGACGAGTCTGATTGGCAGCAGAAGCTCAACTGGGATGAGGTCACTGTAAATGTTTACGAGATGGCAGTAGAGT GCTTGAAAACTAACTATTATGGTCCAAAGCAAATGGTGGAAACTTTTTTACCATCACTTCAGTTGTCTGATTCCCCCAGGATCGTCAATGTTTCCTCCAC AGCTGGGAATTTGAAGATAGTAAAGAACGAATGGGCTGTTGGCGTGTTAAGTGATGCTGAGAATCTGACAGAGGAAAAAGTCGAAGGTGTGTTGAAAAAG TTCATGGAAGACTTTAAAGATGGTTTGTTGGAGAAGAAAGGCTGGCCATCTTTCGCTCCTGCTTATGCCGTCTCGAAAGCATGTTTGAATGCGTACACAA GGATCATAGCCAAAAAGTATCCGAATTTCTGCATCAATTGTGTGTGTCCTGGATTCGTGAAGACGGACATTAATCTACAAACCGGTCCAAAAATTCCTGA AGAGGGTGCCAAGGGTCCGGTGATGTTAGCATTGTTGCCGGACGGGAGTCCTTCTGGCCGATTCTTTGACCAGACAGTGGAAGCTCCCTTTTGA
AA sequence Show only first row Show all	>Lus10014688 pacid=23165655 polypeptide=Lus10014688 locus=Lus10014688.g ID=Lus10014688.BGIv1.0 annot-version=v1.0 MAKRYAVVTGGNKGIGYEICRQLASNGIVVVLTARDRDRGLQAVGQLVNDDPALSDNILFQQLDVTDPSSISSLADFVKTQFGKLDILVNNAGILGAIWR EDVLKSVSYDESDWQQKLNWDEVTVNVYEMAVECLKTNYYGPKQMVETFLPSLQLSDSPRIVNVSSTAGNLKIVKNEWAVGVLSDAENLTEEKVEGVLKK FMEDFKDGLLEKKGWPSFAPAYAVSKACLNAYTRIIAKKYPNFCINCVCPGFVKTDINLQTGPKIPEEGAKGPVMLALLPDGSPSGRFFDQTVEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	0	1
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	2.8	0.9465
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	6.7	0.9051
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	6.9	0.9199
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	8.0	0.9096
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	8.5	0.8888
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10012656 [exp]	8.9	0.8874
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	9.4	0.9153
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	9.9	0.9157
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	14.8	0.9149
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	15.7	0.9143

Compare expression of checked genes

Lus10014688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.