Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 336 / 2e-112 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 322 / 7e-107 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 306 / 1e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 189 / 3e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 186 / 2e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 172 / 4e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 69 / 8e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G65205 61 / 3e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 62 / 4e-10 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 62 / 4e-10 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014688 [exp] 539 / 0 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 517 / 0 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 510 / 1e-180 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 497 / 2e-175 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 396 / 2e-135 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 374 / 5e-127 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 367 / 3e-124 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 359 / 4e-121 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 267 / 3e-85 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 365 / 8e-124 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 332 / 9e-111 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 331 / 3e-110 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 330 / 6e-110 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 326 / 3e-108 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 310 / 3e-102 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 290 / 2e-94 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 277 / 3e-89 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 270 / 6e-86 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 216 / 6e-67 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014689 pacid=23165645 polypeptide=Lus10014689 locus=Lus10014689.g ID=Lus10014689.BGIv1.0 annot-version=v1.0 ATGGAAAACGTGTGCAGGTATGAAGTGGTAACAGGAGGTAATAAAGGGAGTGGGTACGAGATATGCAAGCAGCTGGCATCCAATGGAATTGTCGTCGTTT TTGGTCAACTTGTAAACGATGATCCTGCTCTCTCCGACAACATCTTCTTCCAACAACTTGATGTTACCGAAGCTTCCAGTATTTCCTATCTGGCCCATTT CGTCAAAACCCAGTTCGGCAAACTCGACATCCTTGTGAACAATGCTGGAATTCTTGGAGCCATTTGGCGCGAAGATATCCTGAATTCTGCAACTTATAAT GAGCAGAAGCTCAACTGGGATGAGGTGACTGTGAATGTTGATGAGCTGGCCGAAGAGTGTTTGAAAACTAACTATTATGGTCCGAAGCAAATGGTGGAAG CTTTCTTACCATTACTTCAGTTGTCTGATTCACCCAGGATCGTCAATGTTTCCTCCACTGCTGGGAAGTTGAAGGTATATATTATCTCACTTCAACGAGT GGGCGGTAGGAGTGTTGAGTATTTGACAGAGGAAAGAGTGGAAAGTGTGATGAAAAGTTTCATGGAAGGCTTTACAGAAGGTTTGTTGGAGAAGAAAGGT TGGGTGCCATGTTTTGCTCCAGCTTACACTGTTGCAAAACCATGTTCGAATGCCTACACAAGAATTATAGCCAACAAAATCTTTCTATTTATTACTCGAT CCATCGGGAGTTGGTACAATAGCAAGAGTACTGCTGAGGCGATTCCCACTTTTTCGATCAAGACCATGGCAAAGAGGTATGCTGTGGTAACGGGAGGGAA CAAAGGGATTGGGTATGAGATTTGCAAGCAGCTCGCATCCAATGGGATCGCCGTCGTTTTGACCGCTAGAGACCGAGACAGAGGTCTCCAAGCTGTTGGT CAACTCGTAAACGACGACCCTGCTCTCTCCGACAACATCCTCTTCCAACAACTTGATGTAACCGACGCATCCAGTATTTCCTCTCTGGCCGATTTCGTCA AAACCCAGTTCGGCAAACTTGACATCCTTGTGAACAATGCTGGAATTTTTGGAGTTATCTGGCGCGAAGATATCCTGAAAGCTGTGCCTGATAATGAGCC TGATTGGCAGCAGAAGATCAACTGGAATGAGGTCACTGTTAATGTTTACGAGATGGCTGAAGAGTGCTTGAACACCAACTATTATGGTCCAATGCAAATG GTGGAAGCTTTCCTACCATTACTTCAGTTGTCTCATTCCCCCAGGATCGTCAATGTTTCCTCCACTGCTGGGAAGTTGAAGATGGTGAAGAACGAGTGGG CCGTAGTAGTGTTGAGTGATGCTGAGAATCTGACAGAGGAAAGAGTGGAAGATGTGGTGAAAAGGTTCATGGAAGACTTCAAGGATGGTATGCTGGAGAA GAAAGGGTGGCCATCTCTCTCCCCTGCTTATGCCGTTTCGAAAGCATGTTTGAATGCCTACACAAGGATTGTAGCTAGCAAGTATCCAAATCTCTGCATC AATTGTGTATGTCCGGGGTTCGTGAAGACGGACTTTAATTTACAAGTCGGTCCGAAAAGTCTTAGGGAAGGAGCCAAGGGTCCGGTGATGTTAGCATTGT TGCCAGACGGGAGTCCTTCTGGACGGTTCTTTGATCACACAGTGGAAACACCCTTTTGA
AA sequence Show only first row Show all	>Lus10014689 pacid=23165645 polypeptide=Lus10014689 locus=Lus10014689.g ID=Lus10014689.BGIv1.0 annot-version=v1.0 MENVCRYEVVTGGNKGSGYEICKQLASNGIVVVFGQLVNDDPALSDNIFFQQLDVTEASSISYLAHFVKTQFGKLDILVNNAGILGAIWREDILNSATYN EQKLNWDEVTVNVDELAEECLKTNYYGPKQMVEAFLPLLQLSDSPRIVNVSSTAGKLKVYIISLQRVGGRSVEYLTEERVESVMKSFMEGFTEGLLEKKG WVPCFAPAYTVAKPCSNAYTRIIANKIFLFITRSIGSWYNSKSTAEAIPTFSIKTMAKRYAVVTGGNKGIGYEICKQLASNGIAVVLTARDRDRGLQAVG QLVNDDPALSDNILFQQLDVTDASSISSLADFVKTQFGKLDILVNNAGIFGVIWREDILKAVPDNEPDWQQKINWNEVTVNVYEMAEECLNTNYYGPMQM VEAFLPLLQLSHSPRIVNVSSTAGKLKMVKNEWAVVVLSDAENLTEERVEDVVKRFMEDFKDGMLEKKGWPSLSPAYAVSKACLNAYTRIVASKYPNLCI NCVCPGFVKTDFNLQVGPKSLREGAKGPVMLALLPDGSPSGRFFDHTVETPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	0	1
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	3.0	0.8653
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	4.2	0.8579
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	6.5	0.8144
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	7.1	0.8250
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	9.0	0.8416
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	11.5	0.8039
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	14.8	0.7823
AT2G27080			Late embryogenesis abundant (L...		Lus10025548 [exp]	15.2	0.7305
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	15.3	0.8085
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	16.4	0.7794

Compare expression of checked genes

Lus10014689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.