Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 335 / 1e-115 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 325 / 8e-112 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 305 / 1e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 191 / 6e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 177 / 1e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 174 / 9e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 66 / 3e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G63380 63 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G49670 61 / 3e-10 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT1G62610 60 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006893 [exp] 568 / 0 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 518 / 0 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 517 / 0 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 489 / 2e-176 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 396 / 3e-139 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 368 / 2e-128 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 367 / 3e-128 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 349 / 3e-121 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000242 [exp] 268 / 6e-90 AT3G61220 218 / 2e-70 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 359 / 3e-125 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 340 / 3e-117 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 335 / 1e-115 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 334 / 4e-115 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 333 / 1e-114 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 311 / 3e-106 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 298 / 5e-101 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 279 / 1e-93 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 270 / 2e-89 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 215 / 1e-69 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014690 pacid=23165607 polypeptide=Lus10014690 locus=Lus10014690.g ID=Lus10014690.BGIv1.0 annot-version=v1.0 ATGGAAAATTTGTGCAGGTATGCAGTGGTAACAGGAGGGAACAAAGGGATTGGGTATGAGATTTGCAAGCAGCTCGCATCCAATGGAATCGTCGTCGTAT TGACAGCCAGAGACGAAGATAGAGGCCTCCAAGCTGTTCATCAGCTAATCAAGCTTCACCCTGCTCTCTCTGACAACATCCTCTTCCACCAACTGGATGT TACTGACAGTTCCAGCATTTCGTCTCTGGCCGATTTCGTGAAAACCCAGTTCGGCAAACTCGACATCCTTGTGAACAACGCTGGCATTTTCGGAGCCCTT TGGCGCGAAGATGTGCTGAAATCTGTATCCTATGAGGAGCCTGATTGGCAACAGAAGGTCAACTGGAATGAGTCCACCATTAACATTTATGATATGGCAG AAGAGTGCTTGAAAACCAACTACTATGGATCAAAGCACATGGTGGAAACTTTCTTGCCATTACTTCAATTGTCTGATTCCCCAAGGATCGTCAACGTTTC CTCTGGAGCTGGGATGTTGAAGATTTTGAAGCACGAGTGGGCTGTAGGGGTGTTGAGCGATGTTGAGAATTTGACGGAGGAAAGAGTAGAAAGTGTGATT AAAAGGTTCATGGAAGACTTCAAGGATGGTTTGTTGGAGAAGAAAGGTTGGACATCTTTCTCTCCTGCTTATGCCGTTTCGAAAGCATGTTTGAATGCGT ACACAAGGATGGTAGCCCGCAAGTATCCGAATGTCTGCATCAACTGTGTGTGCCCTGGATTCGCGAAGACAGACATTTGTTTACAATATGGTCCGAAGAG TCTCGAAGAAGGAGCCAGAGGACCGGTGATGTTGGCACTGTTGCCGGACGGGGGTCCTTCTGGACGTTTCTTTGATCACACATCGGAAACACCCTTTTGA
AA sequence Show only first row Show all	>Lus10014690 pacid=23165607 polypeptide=Lus10014690 locus=Lus10014690.g ID=Lus10014690.BGIv1.0 annot-version=v1.0 MENLCRYAVVTGGNKGIGYEICKQLASNGIVVVLTARDEDRGLQAVHQLIKLHPALSDNILFHQLDVTDSSSISSLADFVKTQFGKLDILVNNAGIFGAL WREDVLKSVSYEEPDWQQKVNWNESTINIYDMAEECLKTNYYGSKHMVETFLPLLQLSDSPRIVNVSSGAGMLKILKHEWAVGVLSDVENLTEERVESVI KRFMEDFKDGLLEKKGWTSFSPAYAVSKACLNAYTRMVARKYPNVCINCVCPGFAKTDICLQYGPKSLEEGARGPVMLALLPDGGPSGRFFDHTSETPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	0	1
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	2.8	0.9597
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	5.2	0.9460
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	5.3	0.9378
					Lus10010481 [exp]	6.0	0.9533
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	8.3	0.8652
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	9.2	0.9398
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	9.4	0.9453
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	9.5	0.9265
					Lus10010253 [exp]	9.5	0.9093
AT1G64355			unknown protein		Lus10023098 [exp]	10.1	0.8410

Compare expression of checked genes

Lus10014690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.