Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 322 / 1e-110 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 318 / 5e-109 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 299 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G61830 189 / 4e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 186 / 7e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 158 / 3e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 47 / 9e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G09750 45 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50590 45 / 4e-05 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50690 45 / 4e-05 ATHSD7 hydroxysteroid dehydrogenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014694 [exp] 510 / 0 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 366 / 8e-128 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 366 / 9e-128 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 357 / 1e-120 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 347 / 3e-120 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 347 / 3e-120 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 319 / 9e-109 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 316 / 3e-108 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 243 / 3e-79 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 353 / 8e-123 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 311 / 3e-106 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 311 / 7e-106 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 310 / 1e-105 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 306 / 3e-104 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 305 / 7e-104 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 302 / 1e-102 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 285 / 1e-95 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 234 / 2e-75 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 203 / 5e-65 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014693 pacid=23165597 polypeptide=Lus10014693 locus=Lus10014693.g ID=Lus10014693.BGIv1.0 annot-version=v1.0 ATGGCAGAGACAACCAAGAGGTATGCAGTTGTAACCGGCGGCAACAAGGGGATTGGGTTCGAGATTTGCAGGCAGCTGGCTTCTCATGGAATTCTGGTGA TTTTAACTGCCAGAGATGAAAACAGAGGCCTTGAAGCAGTTCAGAAACTCAAAAATGATGACTCTGCTTTATCGGACTGCATCATCTTCCATCAGCTTGA TGTGGCTGACAGTTCCAGCGTCTCTTCTCTTGCGGATTTCGTCCGAACCCAGTTCGGCAAGCTTGACATCTTGGTGAACAATGCTGCAGTGTTTGGGGCC ATGATCCATGAAGATGTCAGAGCTGCAGTGTTGGACAAGCATGATGAACAAGCACCAGAGATAAACTTGCTCGAGGTTGTCACAGACACATACGAACTGG CCGAAGAATGCTTGAAAATAAACTACTATGGCGCAAAACAAATGATGGATACATTTCTACCTCTACTTCAACTCTCTGATTCACCCAGGATTGTCAATGT TTCCTCTGGCAATGGGAAACTAAAGAATGTGAAAAACGAATCGGCTACAAGAGTACTGAGCAATGTCGATAGCTTGACCGATGAGATTATAGACCAAGTG TTGGAGCAGTTTCTGAATGATGTCAAGCAAGGTTTGTTGGAAACTAAAGGTTGGCCACTTCGATGTTCAGCGTATACACTGTCGAAAGCAGCCATGAATG CTTACACAAGGATCATGGCCAAGAAGTACCCCAAGGTCTGTATGAATTGTGTGTGTCCTGGATCTGTGAAGACTGATATCAACATGAACATGGGGATTAC AACTCCTGAAGAAGGTGGTAAAGGTCCTGTGAAGTTGGCATTGCTGGCCGACGACAGCAGCCCAACTGGTAGTTTCTTTGATCAGACGGAGGAGGGAGCC TTCTGA
AA sequence Show only first row Show all	>Lus10014693 pacid=23165597 polypeptide=Lus10014693 locus=Lus10014693.g ID=Lus10014693.BGIv1.0 annot-version=v1.0 MAETTKRYAVVTGGNKGIGFEICRQLASHGILVILTARDENRGLEAVQKLKNDDSALSDCIIFHQLDVADSSSVSSLADFVRTQFGKLDILVNNAAVFGA MIHEDVRAAVLDKHDEQAPEINLLEVVTDTYELAEECLKINYYGAKQMMDTFLPLLQLSDSPRIVNVSSGNGKLKNVKNESATRVLSNVDSLTDEIIDQV LEQFLNDVKQGLLETKGWPLRCSAYTLSKAAMNAYTRIMAKKYPKVCMNCVCPGSVKTDINMNMGITTPEEGGKGPVKLALLADDSSPTGSFFDQTEEGA F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	1.0	0.9611
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	2.4	0.9355
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	4.2	0.8998
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041160 [exp]	5.2	0.8048
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	8.2	0.8796
					Lus10042300 [exp]	9.7	0.8661
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	13.7	0.8380
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	16.4	0.8000
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	19.9	0.8383
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	22.1	0.8301

Compare expression of checked genes

Lus10014693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.