Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 345 / 2e-119 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 338 / 6e-117 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 313 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 188 / 7e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 187 / 3e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 157 / 6e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 47 / 6e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 45 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G52340 45 / 3e-05 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 44 / 6e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014693 [exp] 510 / 0 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 387 / 5e-136 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 382 / 6e-134 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 365 / 2e-127 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 365 / 2e-127 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 372 / 2e-126 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 340 / 7e-117 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 333 / 9e-115 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 246 / 2e-80 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 382 / 4e-134 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 327 / 2e-112 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 326 / 6e-112 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 323 / 1e-110 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 321 / 4e-110 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 314 / 3e-107 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 313 / 1e-106 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 287 / 9e-97 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 238 / 9e-77 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 219 / 3e-71 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014694 pacid=23165667 polypeptide=Lus10014694 locus=Lus10014694.g ID=Lus10014694.BGIv1.0 annot-version=v1.0 ATGGGAGAGACAACCAAGAGGTGTGCAGTGGTAACCGGCGGCAACAAGGGGATCGGGTTTGAGATTTGCAGGCAGCTAGCTTCTCATGGAATTCTAGTGA TTTTAACAGCTAGAGATGAAAACAGAGGCCTTGAAGCTGTTCAAAAACTCAAAAATGGCGACTCTGCCCTCTCAGACTACATCGTCTTCCATCAGCTTGA CGTGGCTGACAGTTCCAGCGTCTCTTCTCTGGCCGATTTCGTCCGAACCCAGTTCGGCAAACTTGACATCTTGGTGAATAATGCTGCAGTTTTTGGGGCC ATGATTCATGAAGATGCTGTCAGAGCTGCAGGGTTGGACAAGCATGATGGACAACCGAAGATCAACTGGCTCGAGGTCGTGACAGACACATACGAACTAG CCGAAGAATGCTTGAAAATAAACTACTACGGCGCAAAACAGATGATGGATGCATTTCTGCCTCTACTGCAGCTCTCTGATGCCCCCAGAATTGTCAATGT TTCCTCTGGCATGGGGAAACTAAAGACTGTGAAAAACGAATGGGCTATAACAGTATTGAGCGATGTTGAGAATTTGACCGAAGAGATTATAGACAAAGTG TTGGAGCAGTTTTTGGATGATTTCAAGCAAGGTTTGTTGGAAACTAAAGACTGGCCATTTCGATGTTCGGCGTATATACTGTCGAAAGCAGCAATGAATG CTTACACAAGGATCATGGCGAAGAAGTACCCCAAAGTCTGCATGAATTGCGTGTGCCCTGGATATGTGAAGACTGATATTAACATGAACACTGGGATTCG AACTCCCGAAGAAGGTGCTAAAGGTCCTGTGAAGTTGGCATTGCTGGCCGACGACAGCAGCCCGACCGGTAGTTTCTTTGATCAGATGGAGGAGGGAGCC TTCTGA
AA sequence Show only first row Show all	>Lus10014694 pacid=23165667 polypeptide=Lus10014694 locus=Lus10014694.g ID=Lus10014694.BGIv1.0 annot-version=v1.0 MGETTKRCAVVTGGNKGIGFEICRQLASHGILVILTARDENRGLEAVQKLKNGDSALSDYIVFHQLDVADSSSVSSLADFVRTQFGKLDILVNNAAVFGA MIHEDAVRAAGLDKHDGQPKINWLEVVTDTYELAEECLKINYYGAKQMMDAFLPLLQLSDAPRIVNVSSGMGKLKTVKNEWAITVLSDVENLTEEIIDKV LEQFLDDFKQGLLETKDWPFRCSAYILSKAAMNAYTRIMAKKYPKVCMNCVCPGYVKTDINMNTGIRTPEEGAKGPVKLALLADDSSPTGSFFDQMEEGA F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	0	1
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	1.4	0.9352
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	2.4	0.9298
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	2.8	0.9237
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	3.2	0.9380
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	4.5	0.9266
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	4.9	0.9258
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	7.2	0.9284
AT3G17020			Adenine nucleotide alpha hydro...		Lus10037761 [exp]	9.2	0.8854
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	11.5	0.9120
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	11.6	0.9182

Compare expression of checked genes

Lus10014694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.