Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51895 751 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 650 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 520 / 2e-179 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 517 / 6e-178 SULTR3;4 sulfate transporter 3;4 (.1) AT4G08620 500 / 2e-171 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT5G19600 494 / 4e-169 SULTR3;5 sulfate transporter 3;5 (.1) AT1G22150 476 / 1e-161 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 464 / 4e-157 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G10180 434 / 3e-145 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 431 / 9e-144 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006612 [exp] 712 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 704 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 511 / 2e-175 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 510 / 8e-175 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10034603 [exp] 510 / 1e-174 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10041111 [exp] 505 / 5e-173 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10025766 [exp] 504 / 1e-172 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 504 / 1e-172 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10019389 [exp] 500 / 5e-170 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213500 [exp] 822 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 810 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 720 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 707 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 535 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.001G179400 [exp] 526 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.006G156038 [exp] 523 / 2e-180 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.006G158900 [exp] 523 / 3e-180 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.003G056200 [exp] 522 / 8e-180 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.005G167300 [exp] 520 / 9e-179 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10014706 pacid=23165665 polypeptide=Lus10014706 locus=Lus10014706.g ID=Lus10014706.BGIv1.0 annot-version=v1.0 ATGGGGATCACGGATTATGGTTACCCACCGGCGGGGGAGTCGGATTCGTCGGCGGCGGAGTACAACTCCCACAGGGTGGCGATTCCGCCGCCGCAGCCGT TCTTCAGGTCCCTGACATACAACCTGAAGGGGCATCAGCTACGCCAAGCTCGCCAATCTTCCCCCTATTCTCGGCCTCTCCAAGTTAGCTTTACTGATAA CCCAAAACTGTACCTTCATTTGGCTTTCACCGCCACATTCTTCGCCGGAGTTTTCCAGGCTGCCCTCGGCCTCTTAAGGTTAGGGTTCATAGTGGACTTT CTGTCACATGCGACGATAGTAGGGTTCATGGCAGGTGCGGCCACGGTCGTGATCTTGCAGCAGCTGAAAGGGATACTTGGGTTGGAACATTTTACTCGTA AAACTGACATGGTATCCGTTTTGCAATCGGTCTTCGCCCAGACTCATCAGTGGAGGTGGGAAAGTGCAGTGTTGGGATTTTGCTTCCTCTTCTTCCTCCT CGTTACTAAACAATTTAGCAAAAAACGACCAAAATTCTTCTGGATATCAGCATTGGCCCCTCTGACATCGGTTATTCTCGGAAGCGTTCTTGTTTACTTC ACCCACGCTGAAAAACATGGCGTCCAAGTGATAGGAGAGCTGAAGAAGGGACTGAATCCGCTGTCGTTTGGTGATCTTGTATTCGTATCCCCTTATCTTT CCCTTGCCATCAAAACAGGAATCATCACCGGCATCATCGCCCTCGCGGAAGGCATCGCAGTGGGGAGAAGTTTCGCAATGTACAAAAATTACCACATCGA TGGAAACAAAGAAATGATCGCTATTGGAACCATGAACATCGTCGGATCATGCGCTTCCTGTTACCTCACTACTGGGCCGTTTTCGAGATCTGCTGTGAAC TTCAACGCTGGGTGCAAGACAGCGGTATCGAACATAGTGATGGCGCTGGCAGTGATGCTGACTCTACTTTTCCTGACGCCGCTGTTCCATTACACTCCTC TCGTGGTCCTGTCCTCGATCATCATCTCCGCAATGCTCGGCCTCATCGACTACGAGGCTGCCCTCCATCTCTGGGGGATCGATAAGTTCGATTTTGTTGT TTGCATGAGCGCCTACATCGGAGTTGTTTTCGCCAGCGTCGAGATTGGGTTGGTTGTCGCGGTGGGGATCTCTGTACTTAGGGTGCTCTTGTTTGTGGCA AGACCAAAAACATTCATCCTAGGAAATATTCCTAACTCAGGGATCTACAGAAACGTTGAACAATATTCCAATGCCGCCACTGTTCCTGGAGTTCTCGTGC TTGAGATTGATGCCCCGATTTACTTCGCCAACTCGTCCTATTTGAGAGAAAGGATTGCGAGGTGGATCGATGACGAAGAGGGTAGGTTGAAAGCATCAGG GGAAGCCAGCCTCCAATATGTTATTCTAGACATGGGAGCTGTTGGGAACATTGACACAAGTGGGATAAGCATGCTGGAGGAAGTGAAGAAAGTGACTGAC AGAAGAGGGCTGAAGATGGTGGTGGCGAACCCAGGGGCAGAGGTGACGAAGAAGCTAAACAAGGCAAAGTTCATCGACAAAATGGGGCCGGAATGGTTCT TCTTAACGGTTGGAGAAGCCGTGGGAGCCTGCAACTACATGCTTCATACATATAAACAACCGAGCCATGACATTTCCAAAGACGAATCTGCTGTATAA
AA sequence Show only first row Show all	>Lus10014706 pacid=23165665 polypeptide=Lus10014706 locus=Lus10014706.g ID=Lus10014706.BGIv1.0 annot-version=v1.0 MGITDYGYPPAGESDSSAAEYNSHRVAIPPPQPFFRSLTYNLKGHQLRQARQSSPYSRPLQVSFTDNPKLYLHLAFTATFFAGVFQAALGLLRLGFIVDF LSHATIVGFMAGAATVVILQQLKGILGLEHFTRKTDMVSVLQSVFAQTHQWRWESAVLGFCFLFFLLVTKQFSKKRPKFFWISALAPLTSVILGSVLVYF THAEKHGVQVIGELKKGLNPLSFGDLVFVSPYLSLAIKTGIITGIIALAEGIAVGRSFAMYKNYHIDGNKEMIAIGTMNIVGSCASCYLTTGPFSRSAVN FNAGCKTAVSNIVMALAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAALHLWGIDKFDFVVCMSAYIGVVFASVEIGLVVAVGISVLRVLLFVA RPKTFILGNIPNSGIYRNVEQYSNAATVPGVLVLEIDAPIYFANSSYLRERIARWIDDEEGRLKASGEASLQYVILDMGAVGNIDTSGISMLEEVKKVTD RRGLKMVVANPGAEVTKKLNKAKFIDKMGPEWFFLTVGEAVGACNYMLHTYKQPSHDISKDESAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	1.4	0.9155
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	5.1	0.8634
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	9.2	0.8781
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	10.6	0.8593
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	11.9	0.8884
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	15.8	0.8864
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	16.6	0.8651
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	18.7	0.8455
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	20.1	0.8831
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	22.8	0.8760

Compare expression of checked genes

Lus10014706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.