Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 449 / 5e-143 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 186 / 1e-48 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 181 / 7e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 178 / 8e-46 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 177 / 1e-45 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59780 174 / 2e-44 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 171 / 1e-43 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46530 171 / 2e-43 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G10920 162 / 6e-41 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT1G59218 160 / 4e-40 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028639 [exp] 1004 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 985 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 973 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 969 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 687 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 532 / 0 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 444 / 8e-141 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 338 / 1e-100 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 323 / 3e-99 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 429 / 3e-135 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 387 / 4e-119 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 374 / 4e-114 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 373 / 4e-114 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 369 / 1e-112 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 365 / 8e-111 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 359 / 5e-109 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 358 / 2e-108 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 357 / 8e-108 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 344 / 1e-103 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014712 pacid=23165580 polypeptide=Lus10014712 locus=Lus10014712.g ID=Lus10014712.BGIv1.0 annot-version=v1.0 ATGACTGCACAACAAATCTACTATTCGGCCTTGGCGACGAAGGATGTCTTGATACCTGGAGCAACTTCCTACAAGGAAATTCCTGACCAAGTGCTGGAAA TGGAGCAGGAGCGGATGAGGATGATATCATTCCTAAGTGATGCAACTGGTCCAAATGCTACCAAATCCGAAGCAAGTCAAACTCACATTTCCCATGTCAG AGATGTGCTGGACGACGTAGAAGACATCATCGACAAGTTCAGGTACATTGAAAACAGGGGGCGATGTGTTTCCGGCACAGCAATCTTATCACACAATCTT GGGAGTGTTTGGGGATGGCATCAGATTGCTACTCGCATCCGAGAACTCAAGGACAAGTTGAAGGCCTTACCCGACAGGCTTCGGCTGTATACTGCAGCAG ATTCCCATCCTCATGACGGTGAAGTAGTGTTTGATTCAGAGGCGGCTCTATTTCTTGACGAGGAAGACCTTATCGGGATCGAAGCAGCCAACGAAGAGCT TGTTGGATATATCAACAGCGGGGATTTGCAACGGACCACAACTTCGTTAGTAGGCATGGCTGGATCCGGTAAGACCACATTGGCAGCTATTTTGTTCAAC TGTCAGGCTGTCAAGAAGTTTGATTGTCGTGCTTGGATTACTGTCTCCCGAACTTTCAAGATTGAACAACTGTTCATAGACTTGATCAAGGAAATCAACA AATCAGCGACTGGGAAAAAGATTGAAGTAACAGATCTGAGTTCTATGAGCTACCGGGAGCTTGTGGGAAAGCTTGTGGATTTCCTGAAGGGTAGAACTTA TTTGGTTGTCCTGGATGATGTCTGGACGACTGATGTTTGGAGAAGGATCAAAGTGGCACTTCCAAATGGACTAAAGGGTAGTCGAGTCATCCTCACAACT CGTACGGTGGATATTGCGTTGCAGTCTTCTTCAGAAGTTGGAAGCAATGTCCAAAAAGTTAAGCCTCTGGAAAATAACAAAGCACGAGAGCTGTTTTGCA GCAGAGCTTTCTCATCAAGTAATTTTGAAGCGTGCCCGGCGGAGCTTCGAGGTATAGCAGAAGAATTGTTGGAGAAATGCCAAGGCCTTCCTATTGCAAT TGATTCGATTGGTCGGCTCTTGGCCACAAAAGAACGTTCGGTAAAGGCGTGGACAACGACTTTAGAGAATTTGCAGTGGGAGTTGACTAACAATAAACTG CCATTGAACAGTGTCCTGCTTTTGAGCTACAATGATCTTCCATATTGCTTGAAAAAATGCTTCCTACACTTTGCTCTATTCCCCGAGGACTACAAGATTT GGTGTGACAAGCTTGTTAGACTATGGATGGCAGAAGGATTTGTGGAATCAGGTGGAAATGGAGGAGTGTCTCCTCCTGAAGAGGTTGGTATGCGATACAT AAGAGAATTAATCGGCCGAAATGTGCTCCAAGCTGTGAGTTGGGATATGTATGGAGACCATGGAAAGTGCAAGATGCATGATCTTTACAGAGATATCGCT CTTCAAATATCACAAGAGGAGAATTTTTGCTCAGTCCATGCTGTTGGAAGTGAAGACAGCAAATCCAATCATAGCCGCCGTCGTCATCGTGTATCCATCC ATGAGACAAGCAATGAGTCAGGGGTGATCAACCCGCCCGAGAGCGCTAGCAATGAGACAGGCAATAATGAGTCAGTCGCGATCACAATAGAGCAAAGCAA TGAGGCAGAGGTGATCAAGGCAACAGATGTGATTAAGTTGGTTGAAGGTATGCAACATCTCCGATCACTCTTATTATTTGTCAAAGGCAGTCCTTTCTCA TTGAGTGAACTGGGCTGGGCGGATCATCATCTCCTACGTGTAATGGATATGGAAAATGTCCCAGTTGAAGCACTGTCTGAGGATATAGAGGTCTTGCACA ATCTGAAGTATTTGAACCTGAGTTACACTAAGATTAAAAGTCTCTCAAATACTATTGAGAAGTTGTGGAGTCTTGAAACCCTTGATGTCTCATACACCGA TATTGAATCTCTTCCAAGTGGAGTTGTCAAGTTAGAGAACCTACGCCACTTGTTAGCTGGCCGTCTACAATTCGGAAGGCTACTGCAATACCATGGGTTG AAAGGGGTGAAGGTTCCGTCTGGTTCAGACATTAGTTCTCTTAAGAAGTTGCAGGCTCTACGGTTGGTGGAAGCAAATGAAGAGATAGTGAAGCAGCTGA TAAAGATGACCCAACTCGTACAACTTGGAATTACAAAGGTTGGCAAAGCTCAGATGCTAGATTTGTGCTCTGCACTTAAAAATATGCTGCACCTACGTTG GTTAGTTGTGATAGCAAACACTGCGGATGAAATCCTTGAAATGGATTCACTTGGCGAATCGTCTTCTTCTTCTTCTCCGCTTCAACGTCTCGAATATCTC ATCTTGAGCGGCAAGCTGAAGAGCATCCCGAACTGGATTCACTCGCTTCCGAGCCTTACAACGATACGACTAGTTTGGAGTAGGCTTCCATTGGAAATGG ATCCAGCTATGCATCTCCAAGGGATGAACCGCTTAAGGAACTTGTGGCTTCAGAATGCCTATCTGGGTTCAGAGTTGAAGTTCCTCTCAGGGTTTAAGTG TCTCAGGGCTTTGGCATTCGGCAATTTGCCTAATCTGACCAAGCTGACAATTGGTGAAAAGGGAGTTATGCCAGACCTCAGAATTATTCTGGTTAGAGAC TGCCCAAATATGAAGATAATATCTGAAGGGATCAAATTTCTATCCAAACTTAAGGAGTTGAAGCTTGAGAATGTTTCCTGGGAACTAGTGGATCAAATTC GTGGACAGGATCGTGCCAACTTTCGAGACATTCCTCTCATCTGGTGCAGGTACAAATCCGTTGACGATCAATGGATTACTGAAATACTTGATCTCTGA
AA sequence Show only first row Show all	>Lus10014712 pacid=23165580 polypeptide=Lus10014712 locus=Lus10014712.g ID=Lus10014712.BGIv1.0 annot-version=v1.0 MTAQQIYYSALATKDVLIPGATSYKEIPDQVLEMEQERMRMISFLSDATGPNATKSEASQTHISHVRDVLDDVEDIIDKFRYIENRGRCVSGTAILSHNL GSVWGWHQIATRIRELKDKLKALPDRLRLYTAADSHPHDGEVVFDSEAALFLDEEDLIGIEAANEELVGYINSGDLQRTTTSLVGMAGSGKTTLAAILFN CQAVKKFDCRAWITVSRTFKIEQLFIDLIKEINKSATGKKIEVTDLSSMSYRELVGKLVDFLKGRTYLVVLDDVWTTDVWRRIKVALPNGLKGSRVILTT RTVDIALQSSSEVGSNVQKVKPLENNKARELFCSRAFSSSNFEACPAELRGIAEELLEKCQGLPIAIDSIGRLLATKERSVKAWTTTLENLQWELTNNKL PLNSVLLLSYNDLPYCLKKCFLHFALFPEDYKIWCDKLVRLWMAEGFVESGGNGGVSPPEEVGMRYIRELIGRNVLQAVSWDMYGDHGKCKMHDLYRDIA LQISQEENFCSVHAVGSEDSKSNHSRRRHRVSIHETSNESGVINPPESASNETGNNESVAITIEQSNEAEVIKATDVIKLVEGMQHLRSLLLFVKGSPFS LSELGWADHHLLRVMDMENVPVEALSEDIEVLHNLKYLNLSYTKIKSLSNTIEKLWSLETLDVSYTDIESLPSGVVKLENLRHLLAGRLQFGRLLQYHGL KGVKVPSGSDISSLKKLQALRLVEANEEIVKQLIKMTQLVQLGITKVGKAQMLDLCSALKNMLHLRWLVVIANTADEILEMDSLGESSSSSSPLQRLEYL ILSGKLKSIPNWIHSLPSLTTIRLVWSRLPLEMDPAMHLQGMNRLRNLWLQNAYLGSELKFLSGFKCLRALAFGNLPNLTKLTIGEKGVMPDLRIILVRD CPNMKIISEGIKFLSKLKELKLENVSWELVDQIRGQDRANFRDIPLIWCRYKSVDDQWITEILDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	0	1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10016016 [exp]	2.0	0.8176
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	2.2	0.8415
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	14.3	0.8124
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	16.2	0.8120
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	19.7	0.7840
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	25.9	0.7876
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	27.7	0.7940
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	33.5	0.7796
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	44.5	0.7602
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	45.9	0.7717

Compare expression of checked genes

Lus10014712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.