Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65550 732 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 615 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 604 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G10540 588 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 575 / 0 Xanthine/uracil permease family protein (.1) AT5G49990 570 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 538 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 509 / 4e-177 Xanthine/uracil permease family protein (.1) AT5G25420 494 / 7e-173 Xanthine/uracil/vitamin C permease (.1) AT2G26510 462 / 3e-158 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036355 [exp] 991 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 636 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 632 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 616 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 603 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 584 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 565 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 557 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 512 / 3e-178 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015100 [exp] 701 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.008G146400 [exp] 627 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 622 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 617 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 616 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.009G086800 [exp] 575 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 527 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 526 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 516 / 4e-180 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 481 / 8e-166 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10014777 pacid=23150158 polypeptide=Lus10014777 locus=Lus10014777.g ID=Lus10014777.BGIv1.0 annot-version=v1.0 ATGGCTCAAGGCAGCAAGAAGCCGGAGGAGTTACTATTGCCACACCCAGTGAAGGAGCAGCTACCTGGAGTTCAGTACTGCATCAACAGCCCTCCTCCAT GGCCTGAAGCACTGGTTCTTGGATTTCAGCACTACCTTTTGACTCTTGGGATGACTGTCTTGATTCCCACCATCATTGTCCCTGAGATGGGAGGTGGAAA TTTTGAGAAAGTCAGAGTGATACAGACGCTGCTGTTCGTATCAGGAGTCACCACTCTCTTGGAGACGTTATTAGGCACTCGGCTTCCCTCCATTGCATCT GCTTCTTTTGCTTATGTTTTGCCCATTACTTCAATCGTCACAGCCGACCGGTTTCAATCCATAGCAAACCCTCAGGAGAGTTTTCAGAGGTTTGTGCAAA CAATGAGAGCAATCCAGGGCTCTCTGATTATCACTGGTTGCTTCCAAGTGGTTATGGGGTTCTTGGGTATCTGGAGAAATGCTGTCAGATTTCTTAGTCC TCTTTCCATTGCTCCTTGTGTAGCTTTCTCTGGCCTAGGACTTTATTACCTTGGTTTTCCTGCTTTGGCACGATGTATCGAAATTGGACTTCCACAAGTT ATTATAATGGTTTTCATCACACAGTATTTGCCGTACTATGTGAAAACAAAGAGGCCAATATGCGATCGATTCGGACTGCTTTTCTCAGTCCCCATCGTGT GGTTATTTGCTCAGCTCTTGACATCAAGTGGTGTTTATGAAGGAAAATCAGTTGTGACTCAGTTGAGTTGCCGTACAGATCGGTCTGGACTGGTCACTTC AGCTCCTTGGATATTTATTCCTTACCCATTTCAATGGGGGAACCCAACTTTTAAGGCTGCAGAGACTTTTGCAATGATGGCTGCTTCTTTTGTTTCTCTG TTTGAGTCGACTGGAACATTCTATGCAACAGCGAGATATGGCAGTGCCACGCCTGTCCCGCCTTCAATTGTTAGCCGCGGCACCGGATGGCTGGGAATTG GAGTCCTGCTAAATGGAGTTTTCGGCAGTCTCACTGGCTTTACAGCATCAGTTGGAAATGCAGGCTTGTTGGCTTTAACTAAAGTTGGAAGCCGAAGAGT CATCCAAATATCAGCAGTATTCATGATTTTCTTCTCAGTGTTCGGAAAATTCGGAGCCTTTCTCGCATCAATACCAATGCCGATCGTAGCTGGTGTATAC TGCATTCTATTTTGCTACGTCTCATCTGCAGGGCTTGGCGTCCTTCAATTCTGCAACCTCAACAGTTTCAGAACGAAATTCATTCTGGGTTTCTCCTTCT TCATGGGAATCTCCATCCCTCAGTACTTCAGAGAGTACTACACTCAACTGGGTTCCGCGAATCACTCATGGTTTCGTGACGTAGTGGCGATAATCTTCAC GTCACATGCAGTGGTGGCTACTTTTATCGCCTTGTTCTTGGACCGCACGGTATCTGGAGAACCCGAGGAGATCAAGAGAGACAATGGAATGAAATGGTGG GAGAAGTTCAGTTTATACAGTTCAGACATTAGGAGCGATGAATTCTATGGCTTGCCTTGTTGCTTTAACAACCTCTTCCCTTCCCATTAA
AA sequence Show only first row Show all	>Lus10014777 pacid=23150158 polypeptide=Lus10014777 locus=Lus10014777.g ID=Lus10014777.BGIv1.0 annot-version=v1.0 MAQGSKKPEELLLPHPVKEQLPGVQYCINSPPPWPEALVLGFQHYLLTLGMTVLIPTIIVPEMGGGNFEKVRVIQTLLFVSGVTTLLETLLGTRLPSIAS ASFAYVLPITSIVTADRFQSIANPQESFQRFVQTMRAIQGSLIITGCFQVVMGFLGIWRNAVRFLSPLSIAPCVAFSGLGLYYLGFPALARCIEIGLPQV IIMVFITQYLPYYVKTKRPICDRFGLLFSVPIVWLFAQLLTSSGVYEGKSVVTQLSCRTDRSGLVTSAPWIFIPYPFQWGNPTFKAAETFAMMAASFVSL FESTGTFYATARYGSATPVPPSIVSRGTGWLGIGVLLNGVFGSLTGFTASVGNAGLLALTKVGSRRVIQISAVFMIFFSVFGKFGAFLASIPMPIVAGVY CILFCYVSSAGLGVLQFCNLNSFRTKFILGFSFFMGISIPQYFREYYTQLGSANHSWFRDVVAIIFTSHAVVATFIALFLDRTVSGEPEEIKRDNGMKWW EKFSLYSSDIRSDEFYGLPCCFNNLFPSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65550			Xanthine/uracil permease famil...		Lus10014777 [exp]	0	1
					Lus10021893 [exp]	4.5	0.7106
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	6.5	0.6762
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	9.6	0.7880
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	21.3	0.6913
AT2G34930			disease resistance family prot...		Lus10039529 [exp]	25.6	0.5845
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	40.6	0.6569
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028506 [exp]	42.1	0.5645
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	45.2	0.6567
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	66.6	0.5803
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	68.1	0.5761

Compare expression of checked genes

Lus10014777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.