Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61250 324 / 1e-111 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G15310 243 / 4e-79 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 240 / 3e-77 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT1G34670 226 / 4e-72 MYB ATMYB93 myb domain protein 93 (.1) AT4G21440 224 / 2e-71 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 221 / 2e-70 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 218 / 2e-69 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 214 / 2e-68 MYB ATMYB41 myb domain protein 41 (.1) AT5G10280 215 / 4e-68 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G05100 214 / 4e-68 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030378 [exp] 485 / 5e-175 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10033003 [exp] 236 / 1e-75 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10026620 [exp] 226 / 3e-73 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10041142 [exp] 219 / 5e-70 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 219 / 6e-70 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10018418 [exp] 218 / 3e-69 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10019086 [exp] 213 / 1e-67 AT3G01140 272 / 1e-89 NOECK, myb domain protein 106 (.1) Lus10002593 [exp] 213 / 1e-67 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10015712 [exp] 213 / 2e-67 AT3G01140 269 / 5e-88 NOECK, myb domain protein 106 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157600 [exp] 352 / 2e-122 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 334 / 4e-115 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.012G140700 [exp] 263 / 1e-87 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.015G143500 [exp] 258 / 9e-86 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.017G086300 [exp] 238 / 2e-76 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 233 / 8e-75 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.007G093900 [exp] 228 / 4e-73 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 227 / 1e-72 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 226 / 8e-72 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.008G089700 [exp] 225 / 1e-71 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014784 pacid=23150205 polypeptide=Lus10014784 locus=Lus10014784.g ID=Lus10014784.BGIv1.0 annot-version=v1.0 ATGGGGAGGCAGCCCTGCTGCGATAAGAAAGGCTTGAAGAGAGGCCCCTGGACTTCGGAAGAGGACGACCTTCTCGTTACTTATATCCAGAAGCACGGCC ATGGAAGCTGGCGTTCTCTCCCTAAGCTCGCTGGTCTGCTTCGGTGTGGGAAGAGTTGCCGGCTGAGATGGACCAACTATCTCCGGCCAGATATCAAGAG GGGCCCTTTCTCTGCTGAAGACGAGAAGCTCGTTATCCAGCTCCACGGCATTCTTGGAAACAGGTGGGCTGCCATTGCTGCACAGCTTCCAGGAAGAACA GACAACGAGATCAAGAATCTATGGAACACACACTTGAAGAAACGGCTAGTTTCCATGGGAGTCGATCCGCAGACTCACGAGCCATTCGACAGAACAGCAG CACCATCGTCCCCTGGAACTCGCCACATGGCTCAGTGGGAGAGCGCTAGGCTGGAAGCTGAAGCACGCCTCTCAAAAGCCACCAACCCAGCAACAGAAAC TCCAGAAGCTGATTACTTCCTCCGGATATGGAACTCCGAAGTTGGAGAGTCTTTCCGCAAACTCAACAACAATGGCGGAGGTGGAGGAGAAAGAGAAACA GGTACTTCCGAGGAATCTACTTCTTCATCAACCAAGCTTGCGGCGAACAAGTCTCCCAAGAGTGAGAACAATGCTAATAATACTATGGAGTTGCGTTCGG GCGATTCGTCAAGCTGCTGTGGTGGTGATATGGAGGATTCATCAGAAACTGCTCTGCAACTTCTGTTGGATTTCCCTATGGAGCATGATATGAGCTTCTT GGAAGATAGTTTGAGTGACAACTATGGTACTGGTGAGTCTTATGAAAGCTACCTCATCTGCCATCTCTGA
AA sequence Show only first row Show all	>Lus10014784 pacid=23150205 polypeptide=Lus10014784 locus=Lus10014784.g ID=Lus10014784.BGIv1.0 annot-version=v1.0 MGRQPCCDKKGLKRGPWTSEEDDLLVTYIQKHGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFSAEDEKLVIQLHGILGNRWAAIAAQLPGRT DNEIKNLWNTHLKKRLVSMGVDPQTHEPFDRTAAPSSPGTRHMAQWESARLEAEARLSKATNPATETPEADYFLRIWNSEVGESFRKLNNNGGGGGERET GTSEESTSSSTKLAANKSPKSENNANNTMELRSGDSSSCCGGDMEDSSETALQLLLDFPMEHDMSFLEDSLSDNYGTGESYESYLICHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10014784 [exp]	0	1
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	1.0	0.9544
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	2.0	0.9141
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	2.0	0.9254
AT1G80850			DNA glycosylase superfamily pr...		Lus10002310 [exp]	13.0	0.8774
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	13.7	0.9172
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	13.9	0.9031
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10037027 [exp]	16.3	0.9137
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	18.6	0.8923
AT1G05950			unknown protein		Lus10005129 [exp]	21.2	0.8746
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	25.9	0.9085

Compare expression of checked genes

Lus10014784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.