Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 186 / 8e-53 GRAS RGL1 RGA-like 1 (.1) AT3G03450 174 / 2e-48 GRAS RGL2 RGA-like 2 (.1) AT2G01570 170 / 2e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 163 / 2e-44 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 159 / 4e-43 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 142 / 3e-37 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT5G41920 140 / 6e-37 GRAS GRAS family transcription factor (.1) AT1G21450 142 / 1e-36 GRAS SCL1 SCARECROW-like 1 (.1) AT3G54220 140 / 2e-35 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G07530 128 / 2e-31 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017930 [exp] 812 / 0 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10037055 [exp] 440 / 5e-151 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 438 / 4e-150 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10031172 [exp] 211 / 2e-61 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10031748 [exp] 209 / 1e-60 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10041540 [exp] 209 / 4e-60 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 209 / 2e-59 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 161 / 3e-43 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 154 / 7e-41 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091200 [exp] 556 / 0 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 536 / 0 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 219 / 3e-65 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 190 / 3e-53 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 169 / 5e-46 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 169 / 6e-46 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 168 / 8e-46 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 168 / 9e-46 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G073400 [exp] 144 / 2e-37 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 143 / 5e-37 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10014786 pacid=23150194 polypeptide=Lus10014786 locus=Lus10014786.g ID=Lus10014786.BGIv1.0 annot-version=v1.0 ATGGGTCCTGGTCTACTCTGCAATTACTCCGATGAGAGTCATGATAGGGTGAAAAATTCTGATATGAGTCTGATAGAAATGGCTTTCTATCCATACCAGT ATCTCCCCATCCTGGAGAACAGCTACGCCTCAGAATTCATCATTCCAATGCTTGGTAATGATGATGCTGATGCGGATGGTTCCAGAAGGCACAAGCGAAT AAAGCGAAACAACAGCGTCCCTGCATCAATTGGAAGCAATATCGACAAAAATGGAGGAAGCATGATGATGATGATGAGCACGAGCATCAGCCCTGGGAGC ATGATGAAAACCTTGCCTAGGCTTCATTTCAGGGATCATATCTGGACCTACACGCAGAGGTTTCGAGCTGCTGAGGCCATCGAAGAAGCTGCTAAATCGA TGGACATTAATAATGGCGAAGAAGATGGGGGTAGTAGTGATGGGATGAGGCTAGTCCAACTACTGATAGCTTGCGCGGAGGCTGTGGCTTGTCGCGACAA GCCACACGCCTCGGCTCTGTTGACTGAGCTTCGAACGAAAGCTCTAGTCTTGGGCTCGTCTTTCCAGAGAGTGGCCTCGTGCTTTGTCCAAGGGCTGTCC GAGAGGCTTTCTCTCGTTCAGCCCTTGGGAGCTGTCGGGTTTGTTGCCCCCATCATTATGGACAGAGCAGTTTCTGATGAGAAAGAAGAAGCATTGAGCC TTGTTTATGAGAATTGTCCGCATATCCAATTTGGCCACTTTGTGGCCAACTCTTCCATTATGGAAGCCCTTGAGGGAGAGAGTTTTGTCCATATTCTCGA TCTAGGGATGACCCTAGGTCTGGCTCATGGACACCAATGGCGGGGCTTGATCGAAAGCCTTGCCAATAATCGGGCTGGAGAACACCAGTCCGTAAGGCTA CGTGTCACTGGTGTTGGCACGTCAGTTAAGAGATTCAGTACGATAGGCGAGGAGCTGAAAGAGTATGCAAAAGAGTATGGGAATATGGAGATGGAGTTCT CAGTAGTGGAGAGCAATTTGGAGAATCTGAAACCCCAAGACATCAAAACACATGAAGGTGAAGTCCTGGTGGTGAACAGCATTCTCCAGCTGCATTGCGT GGTGAAAGAAAGCAGGGGAGCGTTGAACTCCGTGCTGCAGATGATTAACAACCTGTCACCTAAGGTCATGGTCCTGATGGAGCAGGATTCGAGTCACAAC GGGCCTTTCTTTCTGGGAAGGTTCATGGAGGCGCTGCATTACTATGCTGCCATCTTCGACGCGATGGACGCACCGCCAATGAAGATGCTGAGACAGGCTA AGCAGTGGCTGGTGAAGAAGAAGGTGACTCAAGGGTATACTGTGGTGGAAGAGAAAGGTTGTTTGGTGCTTGGGTGGAAATCCAGGCCTATGGTTTCTGT TTCTTGCTGGAAATCTTCAACTTGA
AA sequence Show only first row Show all	>Lus10014786 pacid=23150194 polypeptide=Lus10014786 locus=Lus10014786.g ID=Lus10014786.BGIv1.0 annot-version=v1.0 MGPGLLCNYSDESHDRVKNSDMSLIEMAFYPYQYLPILENSYASEFIIPMLGNDDADADGSRRHKRIKRNNSVPASIGSNIDKNGGSMMMMMSTSISPGS MMKTLPRLHFRDHIWTYTQRFRAAEAIEEAAKSMDINNGEEDGGSSDGMRLVQLLIACAEAVACRDKPHASALLTELRTKALVLGSSFQRVASCFVQGLS ERLSLVQPLGAVGFVAPIIMDRAVSDEKEEALSLVYENCPHIQFGHFVANSSIMEALEGESFVHILDLGMTLGLAHGHQWRGLIESLANNRAGEHQSVRL RVTGVGTSVKRFSTIGEELKEYAKEYGNMEMEFSVVESNLENLKPQDIKTHEGEVLVVNSILQLHCVVKESRGALNSVLQMINNLSPKVMVLMEQDSSHN GPFFLGRFMEALHYYAAIFDAMDAPPMKMLRQAKQWLVKKKVTQGYTVVEEKGCLVLGWKSRPMVSVSCWKSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10014786 [exp]	0	1
					Lus10000350 [exp]	3.5	0.5910
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	24.4	0.5055
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10028819 [exp]	41.4	0.5076

Compare expression of checked genes

Lus10014786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.