Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 189 / 6e-53 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G04890 177 / 2e-50 GRAS SCL21 SCARECROW-like 21 (.1) AT5G41920 173 / 5e-49 GRAS GRAS family transcription factor (.1) AT1G21450 176 / 2e-48 GRAS SCL1 SCARECROW-like 1 (.1) AT1G63100 174 / 3e-47 GRAS GRAS family transcription factor (.1) AT3G03450 169 / 4e-46 GRAS RGL2 RGA-like 2 (.1) AT5G48150 166 / 1e-45 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT5G66770 165 / 2e-44 GRAS GRAS family transcription factor (.1) AT1G14920 162 / 1e-43 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 159 / 1e-42 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017908 [exp] 829 / 0 AT3G54220 194 / 8e-55 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 213 / 2e-61 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 212 / 3e-60 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10016496 [exp] 186 / 2e-51 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017930 [exp] 182 / 4e-51 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10040734 [exp] 183 / 3e-50 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10006322 [exp] 179 / 8e-50 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 179 / 4e-49 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10033583 [exp] 173 / 2e-47 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114900 [exp] 590 / 0 AT2G04890 184 / 2e-53 SCARECROW-like 21 (.1) Potri.019G085600 [exp] 588 / 0 AT2G04890 193 / 9e-57 SCARECROW-like 21 (.1) Potri.001G326000 [exp] 221 / 2e-64 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G109400 [exp] 194 / 2e-54 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 187 / 5e-52 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.002G073400 [exp] 186 / 5e-52 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.016G143833 [exp] 188 / 7e-52 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G186500 [exp] 184 / 2e-51 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.006G114200 [exp] 183 / 5e-50 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G473200 [exp] 172 / 3e-48 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10014822 pacid=23150159 polypeptide=Lus10014822 locus=Lus10014822.g ID=Lus10014822.BGIv1.0 annot-version=v1.0 ATGGAAGACCTACTCGAAGGCGACGCTTTGAATCTCAGTTTGTCGATCATCAATACAATTCCTACTTACCCCGGCGATCGTCAAACCATAGGGCCTGCAA AGCGGAAGCGATCGGCGCCGTTGTCCACCTCCTCATCCTCCGTTGATGTATTTCCCACCGGTAGCCCCAATCGCAACGGACTATTCGAAGCCAAAATATT CCGACTCCTCCAAATGCGCGACTCGATAATGAATCGGACGGATCTCAATCGGAAATCAGCTCCTCTGCTTACAACTGACGACGACGACTACGGTGACAGC GGAAATAAGGGCCTCCACTTGATTCACTTACTTCTCATTACCGCCACAGCTATCGACGAAGGAAATTCCAATTCGGCCCTCGAAAACCTAGCCGATCTTT ACCGTAGCGTGTCTTTAGTCGGGGACTCTGTTCAACGCGTCGTCGCACAATTCGCGGACGGGTTATCCGCCCGACTCCTGACCAGGAAATCCCCATTCTA CGAAATGATCATGAAGCGTCCAACGGCAGAGGAAGAGTTCTTAGCATTCACGGATCTCTACAAGGTCTCCCCTTGCTACCAATTCGCTCATTTCACGGCC AATCAGTCGATCGTTGAGGCTTTCGAGCGGGAGGAGACGGTCAACGGCCGCGCCCTCCACGTGGTCGATTTTGACGTGTCGTACGGCCTCCAGTGGCCTT CCCTGATCCAATCCATATCGGACCGGGCCACGGCATCAAACCGGATCTCGCTTCGTGTAACCGGGTTCAGTAGGAGCCTTGAGGAGATGAGGGAGACGGA GAGCCGGTTGGTCAGCTTCGCGAAAGGGTTTCGAAACTTGGTTTTCGAATTCCAAGGTTTGTTGAGAGGGTCGAAACTCGTGAACCTGAGGAAACGAAAG AACGAAACGGTAGCGGTCAATCTTGTGTTCCATTTAAACACATTGGCCGACGCGTCGGCGGTCTCCAACACTCTGAAGTCGATCAACGCGTTGAACCCGT CCGTGGTCGTTTTGGTGGAGCACGAAGGGTACCGAAACTCAAAAATGTTCCTTCCAAGGTTTATGGAGTCGTTACACTATTTCGCCGCAATGTTCGATTC GTTGGATGATTGTCTACCGTTGGAGAGTCCGGAGAGGTTGAGGATCGAGAAGAATTTGTTGGGGAACGAAATTAAGACGATATTGAACTGCGATAAAGAT CGGCGCCACTCGGATTCGAAGAATCATGGACCGTTGTTGCGGTACGAGAAGGTGGAGAGTTGGAAAGGGAGGATGGAAGGGCATGGGTTCAGAGGGTTGA AGTTGAGTTCGAGCACTTTGATTCAAGCCAAGCTATTGTTGAAGATCAGGGCACATTATGGACCTACAGTGGGTGATGCTGATGATGTAGGAGGAGGGTT TAGGGTTTTTCAGAAGGATGATGGGAAGGCGATTTCCTTAGGGTGGCAAGATAGGTGTTTGCTTACGGCTTCTGCTTGGACTTCTGTATGA
AA sequence Show only first row Show all	>Lus10014822 pacid=23150159 polypeptide=Lus10014822 locus=Lus10014822.g ID=Lus10014822.BGIv1.0 annot-version=v1.0 MEDLLEGDALNLSLSIINTIPTYPGDRQTIGPAKRKRSAPLSTSSSSVDVFPTGSPNRNGLFEAKIFRLLQMRDSIMNRTDLNRKSAPLLTTDDDDYGDS GNKGLHLIHLLLITATAIDEGNSNSALENLADLYRSVSLVGDSVQRVVAQFADGLSARLLTRKSPFYEMIMKRPTAEEEFLAFTDLYKVSPCYQFAHFTA NQSIVEAFEREETVNGRALHVVDFDVSYGLQWPSLIQSISDRATASNRISLRVTGFSRSLEEMRETESRLVSFAKGFRNLVFEFQGLLRGSKLVNLRKRK NETVAVNLVFHLNTLADASAVSNTLKSINALNPSVVVLVEHEGYRNSKMFLPRFMESLHYFAAMFDSLDDCLPLESPERLRIEKNLLGNEIKTILNCDKD RRHSDSKNHGPLLRYEKVESWKGRMEGHGFRGLKLSSSTLIQAKLLLKIRAHYGPTVGDADDVGGGFRVFQKDDGKAISLGWQDRCLLTASAWTSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10014822 [exp]	0	1
AT3G09220		LAC7	laccase 7 (.1)		Lus10035546 [exp]	9.1	0.9366
AT4G30230			unknown protein		Lus10041416 [exp]	14.8	0.9076
AT5G12340			unknown protein		Lus10036031 [exp]	15.2	0.9255
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	19.1	0.9253
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	20.0	0.9163
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	26.7	0.9185
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	28.4	0.9218
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	35.7	0.9190
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	37.7	0.9133
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	39.8	0.9115

Compare expression of checked genes

Lus10014822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.