Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 409 / 6e-125 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 366 / 9e-110 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G49140 353 / 2e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 348 / 8e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 350 / 9e-105 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 351 / 5e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 348 / 3e-103 TAO1 target of AVRB operation1 (.1) AT5G40910 347 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 348 / 5e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G11170 341 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038249 [exp] 534 / 3e-174 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 511 / 6e-164 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 477 / 6e-151 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 454 / 3e-143 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 431 / 7e-133 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 399 / 1e-122 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 396 / 2e-120 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012246 [exp] 385 / 6e-120 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 384 / 2e-116 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 534 / 1e-171 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 499 / 6e-160 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 484 / 7e-157 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 476 / 2e-151 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 481 / 6e-150 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 472 / 3e-146 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 457 / 1e-143 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 462 / 4e-143 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 446 / 5e-135 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 435 / 2e-134 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014829 pacid=23150207 polypeptide=Lus10014829 locus=Lus10014829.g ID=Lus10014829.BGIv1.0 annot-version=v1.0 ATGCATGATCAGGACTCCCGTCCACAACGGCCGCCTATTCGCGGCCGTCTTCTTGTGAATCCTTTGACCAGGACCCTCGACCCACCACCTCGCGGCCGCC TCCTAGTTCGTCATGGCGATCCTCCTCCTCTTCGTGGCTGCCTTCTAACTACTCCTACAATTCAAAATCCTTCTCCTTCCGACGACCAGCCTACAACCAC AATACCACCTTTGTCGAAATACGACGCATTCATAAGCTTCCGAGGGGAGGACATCCGTAACAAATTCCTGAGTCACCTATACACTCACATGCACGACAGG AGTATAGAAACTTACAAAGACGACGTCAGCCTCAGGCGAGGAGATCAAATCTCCCCTGCCCTCGCCCGAGGCATCGAGATGTCATCAACGTACGTCGTGG TCTTCTCCCCGAACTACGCCACATCGAAGTGGTGCTTGGACGAGCTTGTGAAGATTTTGGAGTGCAGTGTAAAGTACGGGAGGAAGTTGATACCCATATT CTACGACGGAGTGGACCCTTCAATTGTTAAGAACAGAACAGGGAGCTACGGCGATGCGTTTAAGGAACACGAGAAACTTCCCCCGGTGATGCAGCCTAAA GTCCAAAGATGGAGAGATGCTCTGCGGGAAGCTGCTCACTTTGCCGGGTTTGATTCCCTGGTCGTTACGCCTGAAAGTCGCCTCATCAGAGAAGTGGCAA AAAGTGTATTGGACGCAGTAATACCACATCAGAAGGACCCATCTCCCAGCATGAACAATTTGGTGGGCATAGACCATGAGATTGAAAAAATCAATGCATT ACTAGACATTAACGATGAAGAAAAGAACCGGATCATAGGTTTATGGGGGATGGGTGGCATTGGCAAGACCACCCTAGCCAAAGAAATATTCTACAACATC GATCCAGAACGATTTGAAAGTTGTCATTACATCCAAAACTTTGCAGCCCAATTGAAGAGAACACAAGTGACTGATCTACAAAATGAACTCTTCTCCATTT TGTTACAAGATGAAAGTGCACACACCATGCCCATGAATCTGAAACTCAACCGCCTTAGCCGAAAAAGATGTTTCGTAATCATCGATGACGTATCGAGCAC AATACAATTAGAAGCTCTACTTCTTGGAAGATACCGTGATCTATTCGGACCAGGGAGTCGAATCATCTTGACAAGCACGGATCGACAAGTTCTGAGGCAG GTTTGTGAAGTTAAAGAAATCCACAAAGTTAAAGGGCTAGATGCTGATAAAGCCCTGCAACTGCTAAGCATGTATGCTTTGAAGAAGGATAGCCCACCAA GTGAATACGCAGAGAGGTGTAAGAAGGTTGTTTCTTATGCGAGTGGGAACCCATTGGCATTAAAAGTATTGGGTTCAGCTTTGTACCAGCAAAAGATTGA GTATTGGGATGGTACATTGGAGAAGCTGAGGAGCCTTCCTGCTACTAAAGAGATTGAGGATATACTGATGATTAGTTTTGATGAGTTGAGTGATGAGGAA CAGAATGCGTTCCTTGATATTGCTTGCTTCTTCAACCATGAGGATCTTGACTTTGTGAGGAGGGTTTTGGATGACGTCATGGTTACAAATTTGGTGGACA AGTCCCTTGCAGCGGAGGGGAGCACCGATGACAATAAAGGATGGATAATAGAAATGCATGCCTTGCTTCAACATTTGGGCGAGAGGATTGTAAACAAGGA AAAACTCATTGGAAATCGGTCTAGGTTGTGGAATCCCAACGATGTGCATCCTTTGATCAACCAAAATATGGGAACAGAAAACACTCAGGGCATCTTTCTG GACTTGAGCAAAACAGAGGAGATGTCTAGTCCCAAATCCGACAGTTTTGAGAGGATGAGGAACCTGAGATTGTTGTCCATTCAGGTATCCATGAATCGAA AGCTTAACTCAGCTCATGATCTTCCTCTTGAAGTGAAGAAGAAGAAAATGAGTGTCGTTGGGGGGATTAAGTCGCTTCCTCGTGAGCTAAGGTATCTGCA ATGGGACTTGTTTACTCAAACATCTCTACCATCTGGACTTTGGGCCCAAAATCTTCTCGTGCTCAGGCTGAAACATAGCAATATCTTACATCTATGGGAA GGACCTAACCTGGACCTTGGGAATTTGAAAGAGCTCAATCTGTTTGCATCTAAATTCCTAACCAACTTACCTGACTTATCAACCTCTAAAAAGCTGGAGG TGATGGACCTCACAAGTTGTACAAGCCTAACAGAGCTTCATGACTCCATCATAAATCTTCCCAGCCTCAAAATTCTCATCGTAAATTCCTGCGGAGCCCT CAACCTTGACAATCTGAACAACAAGGAGGATGGCAAAAATCCAGCCTTCCCAAGTTTGGAAGAAGCAAACTTAGACAAGACACCAATAGACATGGTTCCC CACTTGATCATATATGCTCCCAATCTCTCTAAACTCAGTTGCTCATCCTGCCTCCAACTGTCAGAGTTTCCAAATACCTCGGAGCCTCAGGAAACATTAC TGCAACTTAATGTGAGCAATTGTGGCAGGATATCGGCCGTTCCTGCTAGGGTAACAAATTTTCTGAACTTGAAGGTGTTTGATCTATCGGGGACAGGGAT CCTGGTGCTACCATATTCTGTCTTAGAGTTGGATAAATTGGAGGAGTTGAAGTTTGCCCAGTGTAAGAAGCTTGTTATTATACCACGTAGCTTCAAGAGG CTGACTCATTTGGAAAAGCTAGAGCTCCAAGGTTGTGATCTGCTGATTAATCAGAAGCCAGAGTTGCCCGACGGCTTGGAGTATACAGACGACGGAGAAC ACAACAACACCAAGAGCAAAGTTCGAAAGTGA
AA sequence Show only first row Show all	>Lus10014829 pacid=23150207 polypeptide=Lus10014829 locus=Lus10014829.g ID=Lus10014829.BGIv1.0 annot-version=v1.0 MHDQDSRPQRPPIRGRLLVNPLTRTLDPPPRGRLLVRHGDPPPLRGCLLTTPTIQNPSPSDDQPTTTIPPLSKYDAFISFRGEDIRNKFLSHLYTHMHDR SIETYKDDVSLRRGDQISPALARGIEMSSTYVVVFSPNYATSKWCLDELVKILECSVKYGRKLIPIFYDGVDPSIVKNRTGSYGDAFKEHEKLPPVMQPK VQRWRDALREAAHFAGFDSLVVTPESRLIREVAKSVLDAVIPHQKDPSPSMNNLVGIDHEIEKINALLDINDEEKNRIIGLWGMGGIGKTTLAKEIFYNI DPERFESCHYIQNFAAQLKRTQVTDLQNELFSILLQDESAHTMPMNLKLNRLSRKRCFVIIDDVSSTIQLEALLLGRYRDLFGPGSRIILTSTDRQVLRQ VCEVKEIHKVKGLDADKALQLLSMYALKKDSPPSEYAERCKKVVSYASGNPLALKVLGSALYQQKIEYWDGTLEKLRSLPATKEIEDILMISFDELSDEE QNAFLDIACFFNHEDLDFVRRVLDDVMVTNLVDKSLAAEGSTDDNKGWIIEMHALLQHLGERIVNKEKLIGNRSRLWNPNDVHPLINQNMGTENTQGIFL DLSKTEEMSSPKSDSFERMRNLRLLSIQVSMNRKLNSAHDLPLEVKKKKMSVVGGIKSLPRELRYLQWDLFTQTSLPSGLWAQNLLVLRLKHSNILHLWE GPNLDLGNLKELNLFASKFLTNLPDLSTSKKLEVMDLTSCTSLTELHDSIINLPSLKILIVNSCGALNLDNLNNKEDGKNPAFPSLEEANLDKTPIDMVP HLIIYAPNLSKLSCSSCLQLSEFPNTSEPQETLLQLNVSNCGRISAVPARVTNFLNLKVFDLSGTGILVLPYSVLELDKLEELKFAQCKKLVIIPRSFKR LTHLEKLELQGCDLLINQKPELPDGLEYTDDGEHNNTKSKVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	0	1
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	2.0	0.9475
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	3.7	0.9442
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	4.5	0.9366
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	4.6	0.9409
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	5.9	0.9215
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	6.5	0.9256
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	7.4	0.9256
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	9.4	0.9205
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	9.5	0.9167
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	10.4	0.9202

Compare expression of checked genes

Lus10014829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.