Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 530 / 0 Nucleotide-sugar transporter family protein (.1) AT5G05820 524 / 0 Nucleotide-sugar transporter family protein (.1) AT5G04160 428 / 2e-151 Nucleotide-sugar transporter family protein (.1) AT3G10290 424 / 4e-149 Nucleotide-sugar transporter family protein (.1) AT1G12500 371 / 4e-128 Nucleotide-sugar transporter family protein (.1) AT1G21870 157 / 6e-45 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 152 / 2e-43 EamA-like transporter family protein (.1) AT5G11230 100 / 6e-24 Nucleotide-sugar transporter family protein (.1) AT4G32390 100 / 8e-24 Nucleotide-sugar transporter family protein (.1) AT5G25400 98 / 5e-23 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009878 [exp] 609 / 0 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 514 / 0 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 511 / 0 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 485 / 9e-174 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 414 / 1e-145 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 414 / 2e-145 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 321 / 1e-109 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 307 / 2e-103 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 156 / 1e-44 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 538 / 0 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 530 / 0 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 484 / 2e-173 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 460 / 4e-164 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 430 / 3e-152 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 405 / 2e-142 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 390 / 8e-136 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 382 / 2e-132 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 155 / 4e-44 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 154 / 7e-44 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10014832 pacid=23150153 polypeptide=Lus10014832 locus=Lus10014832.g ID=Lus10014832.BGIv1.0 annot-version=v1.0 ATGAAGGGAAACATTGCTGCGCCGTCACCGGCGTCTTCGATGCTCTTTACAGTCGGCCTGGTCAGCTCTTGGTACTCCTCCAACATTGGCGTACTGCTCC TGAACAAATACTTGCTCAGTAGTTATGGGTTCAAGTACCCGATTTTCCTCACCATGTGCCACATGACGGCTTGCAGTCTCCTCAGCTACATCGCCATTGC CTGGATGAGGATTGTGCCAATGCAGACTATTCGATCCCGCACCCAATTCTTTAAGATCTCCGCCTTGAGCCTCATTTTCTGCGTGTCGGTGGTGTTCGGC AACATCTCTCTCCGCTTCCTTCCTGTCTCGTTTAATCAGGCTATTGGTGCTACAACCCCTTTCTTCACCGCTGTCTTTGCGTATGTCATGACTCTCAAGA GAGAGGCTTGGCTCACTTACCTCGCATTGGTTCCCGTCGTTACTGGAGTCATCATTGCCAGTGGGTATTTTGAGCTGTTTTCTGGGTTGGAGGTTCATGA TTGCGATTTCAATAATTCTGTCTCTGATCTCTCTTGTTTTTTTGGTGGTGTGTTGCAAAAGGGTGAACCAAGCTTCCATCTCTTTGGTTTCCTTATGTGT ATAGCTGCTACTGCGGCTAGAGCTCTCAAGTCAGTCCTCCAGGGTATATTGCTTTCTTCTGAGGGGGAGAAGCTGCATTCCATGAATCTACTCCTTTACA TGGCTCCAATTTCTGTTGTGTTTCTACTGCCTACTACGCTCATAATGGAAAGGAATGTGGTTGGCATTACACTGGCTCTCGCTAGAGATGACAGCAAGAT CATCTGGTTGCTGCTGTTCAACTCAGTATTAGCTTTTTTTGTTAATTGGACCAACTTTTTGGTCACTAAGCACACAAGTGCTCTCACTCTCCAGGTATTG GGGAATGCCAAAGGTGCTGTAGCGGTGGTGGTGTCGATTCTAATATTCCAAAATCCAGTATCCGTGACAGGAATGCTTGGCTACTCCCTGACAGTGCTTG GAGTCGTCCTCTACAGCGAAGCGAAGAAAAGAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10014832 pacid=23150153 polypeptide=Lus10014832 locus=Lus10014832.g ID=Lus10014832.BGIv1.0 annot-version=v1.0 MKGNIAAPSPASSMLFTVGLVSSWYSSNIGVLLLNKYLLSSYGFKYPIFLTMCHMTACSLLSYIAIAWMRIVPMQTIRSRTQFFKISALSLIFCVSVVFG NISLRFLPVSFNQAIGATTPFFTAVFAYVMTLKREAWLTYLALVPVVTGVIIASGYFELFSGLEVHDCDFNNSVSDLSCFFGGVLQKGEPSFHLFGFLMC IAATAARALKSVLQGILLSSEGEKLHSMNLLLYMAPISVVFLLPTTLIMERNVVGITLALARDDSKIIWLLLFNSVLAFFVNWTNFLVTKHTSALTLQVL GNAKGAVAVVVSILIFQNPVSVTGMLGYSLTVLGVVLYSEAKKRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	1.0	0.9063
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	2.0	0.8741
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10019856 [exp]	9.0	0.8661
AT3G08670			unknown protein		Lus10021382 [exp]	11.0	0.8547
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10012404 [exp]	11.9	0.8085
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	12.3	0.8551
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	13.0	0.8343
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	14.3	0.8239
AT4G39840			unknown protein		Lus10041688 [exp]	17.4	0.8498
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	17.7	0.8328

Compare expression of checked genes

Lus10014832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.