Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11280 236 / 7e-78 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G05790 233 / 4e-76 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 214 / 1e-68 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 213 / 6e-68 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G01200 197 / 2e-62 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 169 / 5e-51 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 163 / 1e-48 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 149 / 2e-44 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 146 / 7e-42 MYB Homeodomain-like transcriptional regulator (.1) AT3G10580 129 / 4e-36 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009884 [exp] 446 / 5e-160 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 266 / 3e-89 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10040696 [exp] 226 / 4e-73 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 226 / 7e-73 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 217 / 1e-69 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10027781 [exp] 176 / 5e-54 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 174 / 5e-53 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 174 / 9e-53 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10040225 [exp] 162 / 4e-50 AT3G11280 144 / 3e-43 Duplicated homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193000 [exp] 272 / 3e-91 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 268 / 1e-89 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 225 / 7e-73 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.016G112300 [exp] 224 / 1e-72 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 224 / 3e-72 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.009G042600 [exp] 221 / 4e-71 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.007G076200 [exp] 171 / 1e-51 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 167 / 2e-50 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 166 / 5e-50 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 159 / 4e-48 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014837 pacid=23150165 polypeptide=Lus10014837 locus=Lus10014837.g ID=Lus10014837.BGIv1.0 annot-version=v1.0 ATGGAAGCGGCTGTGTACGAGCATTTCTACATGCCGCAAAACGACGACGTGGGGTCGGAGTACTGGACCAGGGAGGAGAACAAGGCGTTCGAGAGCGCTC TGGCTATATACGGGGACGAGCACGATCCTGATCGTTGGTTTAAGGTGGCCGCCATGATCCCGGGGAAATCGGTTTCCGATGTTATCAAACAGTACATGGA ATTGGAGGAAGACGTCGGGGAGATCGAAGCTGGGAGGGTTCCTTTACCGGGGTACTTTCCCGGCGGCGATGAAGACGACTGCTCTTCTTTCACGCTGGAG CTCATCGATTCCTTCAGAAAACGCCCGCTGGGGTCCACCAAGACCTCCGACCAGGGCCGCAAAAAGGGCGTCCCTTGGACCGAAGACGAACACAGGAGGT TCTTGAAGGGGCTAATGAAGTACGGGAAAGGGGATTGGAGGAACATATCACGTAATTTCGTGGTGTCAAAGACCCCAACTCAAGTTGCTAGCCACGCCCA AAAGTACTTCATTAGGCAGCAGCTCTCCGGCGTTAAGGACAAGAGGAGGCCAAGTATCCATGACATCACCACCGTCAATCTCTCCTCACTCGACTCATCA TCCGCCGCCGCCAACGAGCTCTCCGGCCTCTTTTCCTCACCGGCGGTGGCTTATAAATACAATAACAAGGCCAGCTGGAACTACCAACATAGTACTACAA CTAGTAGTAGTCCATCATCAAACAGCTTGTTCATGGTGGCCTCGTCATCGCCTTATAATAACTATTACGATCATATCGCCGCCTTTCAGACTTCGAATGC CAGACGAATCCGAGGATGA
AA sequence Show only first row Show all	>Lus10014837 pacid=23150165 polypeptide=Lus10014837 locus=Lus10014837.g ID=Lus10014837.BGIv1.0 annot-version=v1.0 MEAAVYEHFYMPQNDDVGSEYWTREENKAFESALAIYGDEHDPDRWFKVAAMIPGKSVSDVIKQYMELEEDVGEIEAGRVPLPGYFPGGDEDDCSSFTLE LIDSFRKRPLGSTKTSDQGRKKGVPWTEDEHRRFLKGLMKYGKGDWRNISRNFVVSKTPTQVASHAQKYFIRQQLSGVKDKRRPSIHDITTVNLSSLDSS SAAANELSGLFSSPAVAYKYNNKASWNYQHSTTTSSSPSSNSLFMVASSSPYNNYYDHIAAFQTSNARRIRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	1.0	0.8935
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	1.4	0.8882
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	1.7	0.8733
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	3.2	0.8173
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	4.0	0.8376
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	4.5	0.8447
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	4.5	0.8633
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	6.7	0.8253
AT2G45040			Matrixin family protein (.1)		Lus10007791 [exp]	6.9	0.7895
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	7.5	0.8388

Compare expression of checked genes

Lus10014837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.