Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 504 / 4e-178 GRAS GRAS family transcription factor (.1) AT5G67411 230 / 7e-74 GRAS GRAS family transcription factor (.1) AT4G37650 188 / 8e-54 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G03450 143 / 3e-37 GRAS RGL2 RGA-like 2 (.1) AT3G13840 141 / 8e-37 GRAS GRAS family transcription factor (.1) AT5G17490 141 / 1e-36 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 139 / 5e-36 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G29065 140 / 6e-36 GRAS family transcription factor (.1) AT1G21450 137 / 6e-35 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 132 / 2e-33 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011076 [exp] 794 / 0 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10039709 [exp] 360 / 1e-120 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10018498 [exp] 350 / 1e-116 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10019281 [exp] 167 / 5e-46 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 162 / 8e-45 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 160 / 1e-43 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 161 / 2e-43 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 159 / 2e-43 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10042776 [exp] 159 / 9e-43 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053500 [exp] 604 / 0 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 591 / 0 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G119000 [exp] 376 / 4e-127 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.017G041500 [exp] 373 / 4e-126 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.017G019900 [exp] 188 / 2e-54 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 180 / 9e-52 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 177 / 8e-50 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.001G168800 [exp] 164 / 6e-45 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.003G065400 [exp] 159 / 4e-43 AT3G13840 430 / 1e-145 GRAS family transcription factor (.1) Potri.005G186500 [exp] 155 / 2e-41 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10014852 pacid=23142425 polypeptide=Lus10014852 locus=Lus10014852.g ID=Lus10014852.BGIv1.0 annot-version=v1.0 ATGATCAATAACAACAACAACAACAAGAACCAGCAGACAGGATTAGGAGGAGGAGGAGGCGGAGTACTGGGTCAATGGCCAGGCCTACTCCCAATTACTA CTACTACTTCCAAGTCATTTGGAAACTTCGGAGACGCAAACTGCATGGAGCAGCTGTTAGTCCACTGTGCCAACGCTATCCAAACCAACGACGCCACTCT CGCCCAGCAGATACTCTGGGTCCTCAACAACATTGCACCTCCAGATGGCGACTCCAACCAGCGGCTCACTTGCGCCTTCCTCCGAGCCCTCGTCGCCCGC GCCGCTAAAACCGGCACCTGCCAGCTCCTCGCCGCTCGCTACTCCTCCACTTATAACAACCTCGTTCCCATCCCTACCCACCGCTTCTCCGTCGTCGAGC TTGCCTCCTTCATCGACCTCACTCCTTGGCACCGCTTCGGCTTCACCGCAGCCAATTCCGCCATCCTCGACTCCATCGAGGGATACTCGTCCGTACACCT CGTCGACCTCGGATCCACCCACTGCATGCAGATCCCTACCTTGATCGACGCTATCTCCTCCCGGTTCGATCCCCCACCACTAATCAGGCTTACAGTCGCC GCCGCGTATGAAGAAAGGTCCACCACTACCCTGCCACCGCCTGTACTAGATCTCTCCTACGAAGAATTGGGGTCAAAGCTGGTCAACTTTGCAAGGTCAC GAAACGTAGCAATGGAATTCAGAGTCGTGACGTCCTCCTACTCGGACGGATTCCAATCATTAATCGAGCACCTCCGAATACAACAAGTCCTCTACTCGGA ATCATCATCCACCAGTACAGAAGCACTGGTGATTAACTGCCACATGATGCTGCACTACATTCAAGATGAAACAACGTTATCATCGTCGATGTCGGCGAGG GAGGTGTTTCTGAAGTTGATAAGGAGCCTGGAGCCGACGGCGGTGGTGGTGGTGGAGGAGGACGCGGAGCTGAGTGGGGGTAATTTGGTGAGCAGGCTGA GGTCGGCTTTCAACTACTTTTGGATACCGTTCGATGCGGTGGAGGCGTTTCTGCCGGCGGGGAGTAGGCAGAGACAGTGGTACGAGGCGGAGGTGTGTTG GAGGATAGAGAATGTGATAGCTCAGGAAGGTGTGCAGAGAGTGGAGAGAGGTGAAGGGAAGTCGAGTTGGGTCCAGAGGATGAGAAACGCTGCGTTTAAG GGAGTTGGGTTTGGTGAGGAATGCGTGGCCGAGGTGAGAGGGATGCTTGGGGAACATGCCGCAGGGTGGGGTTTGAAGAAGGAAGAGGATGATCAACACC TCCTTCTCACCTGGAAAGGTCATAACGTTATTTTCGCCACTGCTTGGATTCCTAACTAG
AA sequence Show only first row Show all	>Lus10014852 pacid=23142425 polypeptide=Lus10014852 locus=Lus10014852.g ID=Lus10014852.BGIv1.0 annot-version=v1.0 MINNNNNNKNQQTGLGGGGGGVLGQWPGLLPITTTTSKSFGNFGDANCMEQLLVHCANAIQTNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALVAR AAKTGTCQLLAARYSSTYNNLVPIPTHRFSVVELASFIDLTPWHRFGFTAANSAILDSIEGYSSVHLVDLGSTHCMQIPTLIDAISSRFDPPPLIRLTVA AAYEERSTTTLPPPVLDLSYEELGSKLVNFARSRNVAMEFRVVTSSYSDGFQSLIEHLRIQQVLYSESSSTSTEALVINCHMMLHYIQDETTLSSSMSAR EVFLKLIRSLEPTAVVVVEEDAELSGGNLVSRLRSAFNYFWIPFDAVEAFLPAGSRQRQWYEAEVCWRIENVIAQEGVQRVERGEGKSSWVQRMRNAAFK GVGFGEECVAEVRGMLGEHAAGWGLKKEEDDQHLLLTWKGHNVIFATAWIPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	1.0	0.9649
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	4.5	0.9316
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	4.9	0.9356
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	5.8	0.9448
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	6.5	0.9403
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	6.9	0.9336
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	9.2	0.9333
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	11.0	0.9155
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	11.0	0.9229
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	11.3	0.9333

Compare expression of checked genes

Lus10014852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.