Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47240 749 / 0 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT5G67330 744 / 0 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 739 / 0 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT4G18790 634 / 0 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT1G15960 338 / 1e-110 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 320 / 1e-103 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT5G03280 141 / 2e-35 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010395 [exp] 930 / 0 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 724 / 0 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10032853 [exp] 724 / 0 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10024069 [exp] 341 / 2e-111 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 340 / 2e-111 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10018132 [exp] 322 / 3e-104 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 318 / 1e-102 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10013803 [exp] 135 / 2e-33 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 132 / 3e-32 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050600 [exp] 769 / 0 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 753 / 0 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G121000 [exp] 711 / 0 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.001G044900 [exp] 340 / 2e-111 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.002G080400 [exp] 332 / 4e-108 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 331 / 9e-108 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 330 / 2e-107 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 329 / 5e-107 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.016G090800 [exp] 139 / 8e-35 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.006G127100 [exp] 137 / 3e-34 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10014868 pacid=23142400 polypeptide=Lus10014868 locus=Lus10014868.g ID=Lus10014868.BGIv1.0 annot-version=v1.0 ATGTCGTCGGACGACAGGGAGGAAACTGCCTACGATTCCTCTGAGAAAATCCACGTAGTCGGGTTGGATTCCGACGCCGATGACGCCGTCTCTGATTTTC CCCCGCCTTTCTCCTGGAGGAAGCTCTGGCTCTTCACGGGACCTGGGTTCTTGATGTCTATAGCGTTCCTTGATCCGGGGAATTTGGAAGGCGATCTTCA GTCCGGTGCCATCGCTGGATACTCCCTCCTCTGGCTGCTCATGTGGGCCACCGCGATTGGGCTTCTCATTCAGATGCTTTCGGCTCGCCTCGGCGTCGCC ACTGGCAGGCATTTGGCTGAGCTCTGCCGTGACGAGTACCCCAATTGGGCGCGGATGCTGCTCTGGATCATGGCTGAGTTAGCTCTCATAGGAGCTGATA TTCAGGAAGTTATCGGGAGTGCTATTGCCATCAAGATCTTGAGTAATGGCTTTTTGCCTCTCTGGGCTGGGGTTATAATCACCGCTCTTGATTGTTTCGT CTTCCTGTTTCTGGAGAACTATGGCGTGAGAAAGCTGGAAGCTTTCTTTGCCTTTTTAATTGCTGTAATGGCAATTTCATTTGCTTGGATGTTTGGTGAT GCGAAACCTAGTGGGAAAGAGCTTCTTCTGGGGGTATTGATTCCTAAACTTAGCTCAAGAACCATAAAACAAGCTGTTGGAGTCGTGGGTTGCATAATCA TGCCCCACAATGTGTTCTTACACTCGGCACTGGTACAATCAAGAGATGTGAATCGCAGCAAGAAGGGCCGCGTTCACGAAGCTCTCCGATACTATGGGAT TGAGTCTACTGTTGCTCTTGTAGTGTCGTTTCTCATCAACATATGCGTCACTACCGTGTTTGCAAAGGCATTCTATGGCACTGAAGTTGCCAACAGTATT GGCCTTGTAAACGCAGGTCAGCTTCTTCAAGACAAGTATGGGGGTAGTGGGTTCCCGATTCTGTATATCTGGGGGATTGGGTTGTTGGCAGCGGGTCAAA GTAGCACTGTAACTGGCACTTATGCTGGCCAGTTTATAATGGGTGGTTTTCTCAACTTGAGATTGAAGAAATGGGTGAGGGCAATGATCACTCGGAGTTG TGCCATCATCCCAACCATTATTGTTGCGCTCGTCTTCGATTCCTCTGAAGATTCTCTGGATAAGTTAAATGAATGGCTGAACGTGCTACAGTCAGTTCAG ATTCCGTTTGCACTTATACCCCTTCTCTATCTGGTCTCCAAGGAACAAATCATGGGTTCTTTTCGGATTGGTCCAGTGCTCAAGTTTATATCATGGATGG TTACTGTGTTGGTGATATTGATAAACGGCTACCTTTTGCTGGACTTTTTCATGAATGTTGTAAATGGAATAGCAATCGCAGTAGTGGTTTGTACATTCAC AGTTGGATATGTATCATTCATATTCTACCTTGTGTCACAAGGCGTTACGTGGGGCCGTCAGCCTAAACAGATAGATCTGAATTGA
AA sequence Show only first row Show all	>Lus10014868 pacid=23142400 polypeptide=Lus10014868 locus=Lus10014868.g ID=Lus10014868.BGIv1.0 annot-version=v1.0 MSSDDREETAYDSSEKIHVVGLDSDADDAVSDFPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAIGLLIQMLSARLGVA TGRHLAELCRDEYPNWARMLLWIMAELALIGADIQEVIGSAIAIKILSNGFLPLWAGVIITALDCFVFLFLENYGVRKLEAFFAFLIAVMAISFAWMFGD AKPSGKELLLGVLIPKLSSRTIKQAVGVVGCIIMPHNVFLHSALVQSRDVNRSKKGRVHEALRYYGIESTVALVVSFLINICVTTVFAKAFYGTEVANSI GLVNAGQLLQDKYGGSGFPILYIWGIGLLAAGQSSTVTGTYAGQFIMGGFLNLRLKKWVRAMITRSCAIIPTIIVALVFDSSEDSLDKLNEWLNVLQSVQ IPFALIPLLYLVSKEQIMGSFRIGPVLKFISWMVTVLVILINGYLLLDFFMNVVNGIAIAVVVCTFTVGYVSFIFYLVSQGVTWGRQPKQIDLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10014868 [exp]	0	1
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	3.7	0.7407
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	8.5	0.7457
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	19.4	0.7355
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	27.7	0.7021
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	28.2	0.7255
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	30.8	0.7254
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	33.2	0.6875
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	41.0	0.6774
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	42.6	0.7156
AT5G24500			unknown protein		Lus10032937 [exp]	54.0	0.6521

Compare expression of checked genes

Lus10014868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.