Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18590 144 / 1e-43 AtENODL5 early nodulin-like protein 5 (.1) AT5G14345 142 / 1e-43 AtENODL21 early nodulin-like protein 21 (.1) AT1G48940 141 / 1e-42 AtENODL6 early nodulin-like protein 6 (.1) AT1G79800 107 / 4e-29 AtENODL7 early nodulin-like protein 7 (.1) AT4G28365 105 / 2e-28 AtENODL3 early nodulin-like protein 3 (.1) AT4G31840 104 / 2e-28 AtENODL15 early nodulin-like protein 15 (.1) AT4G32490 95 / 2e-24 AtENODL4 early nodulin-like protein 4 (.1) AT2G25060 93 / 7e-24 AtENODL14 early nodulin-like protein 14 (.1) AT3G20570 90 / 2e-22 AtENODL9 early nodulin-like protein 9 (.1) AT4G30590 89 / 2e-22 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022318 [exp] 344 / 1e-122 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10032111 [exp] 206 / 2e-68 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10009617 [exp] 128 / 2e-37 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10014575 [exp] 117 / 2e-30 AT5G40640 714 / 0.0 unknown protein Lus10011158 [exp] 106 / 1e-28 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 100 / 2e-26 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10018617 [exp] 96 / 9e-25 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 94 / 4e-24 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10024846 [exp] 93 / 2e-23 AT1G79800 147 / 1e-44 early nodulin-like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338800 [exp] 185 / 4e-60 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.015G052000 [exp] 137 / 2e-41 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.015G113300 [exp] 131 / 4e-39 AT5G14345 110 / 9e-32 early nodulin-like protein 21 (.1) Potri.015G114600 [exp] 124 / 4e-36 AT5G14345 97 / 2e-26 early nodulin-like protein 21 (.1) Potri.018G018200 [exp] 100 / 9e-27 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 99 / 4e-26 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.001G187700 [exp] 98 / 7e-26 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 98 / 1e-25 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.006G184100 [exp] 93 / 6e-24 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.001G085100 [exp] 93 / 8e-24 AT1G64640 150 / 3e-46 early nodulin-like protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10014880 pacid=23142436 polypeptide=Lus10014880 locus=Lus10014880.g ID=Lus10014880.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTGCTACTGCAATAACACTAGCATTGCCATGAAGCACGCAACAAAGCTGCTGCTCCTGGTGATGCTGCTGTATGCAACCGACTCAGTCA CTTCCTTTGAGTACCAAGTTGGTGCAGGGAAAGGATGGGTTGTCCCCCCTTCCAACGACACCAGAATCTACAATGGCTGGGCTTCTGAGAACAGATTCAT CATTGGTGACACCGTCAGGTTTAGGTACAAGAAGGACTCGGTAATGGAAGTGAATAAGGAAGAGTACAAGAAGTGCAGTCCAACCCATCCAAAGTACTTC TCCAACAACGGGAACACGGTGTACGAGCTTGATCATGCAGGGTCTTACTATTTCATCAGTGGAGTTGCTGGCCATTGTGGGAAAGGCCAGAAGATGATCA TTAAAGTGTTGACGACTTCTGATGATGATAATGGGTATGGAAGCAGCAACATTACTCCTTATCATGGTGGTGGTGAAGATCCCAACAGAAAGTCATCGTC AGCTGGAACTCTGCCTCTTGGTGGATTCTCTTCTTCTTTCTTGATCATGACAGCCATTGTTGTTTCCGTACTCTAA
AA sequence Show only first row Show all	>Lus10014880 pacid=23142436 polypeptide=Lus10014880 locus=Lus10014880.g ID=Lus10014880.BGIv1.0 annot-version=v1.0 MASSCYCNNTSIAMKHATKLLLLVMLLYATDSVTSFEYQVGAGKGWVVPPSNDTRIYNGWASENRFIIGDTVRFRYKKDSVMEVNKEEYKKCSPTHPKYF SNNGNTVYELDHAGSYYFISGVAGHCGKGQKMIIKVLTTSDDDNGYGSSNITPYHGGGEDPNRKSSSAGTLPLGGFSSSFLIMTAIVVSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	0	1
					Lus10023005 [exp]	1.0	0.9457
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	2.0	0.9149
					Lus10023004 [exp]	2.4	0.8619
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	5.7	0.8085
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	8.0	0.8361
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	8.9	0.8361
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	9.2	0.6740
					Lus10014737 [exp]	9.8	0.8361
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	10.6	0.8361
					Lus10021773 [exp]	11.3	0.8361

Compare expression of checked genes

Lus10014880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.