Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 513 / 9e-168 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G43470 321 / 1e-95 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 318 / 1e-94 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 314 / 5e-93 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 301 / 1e-88 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 296 / 2e-86 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 285 / 4e-83 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 285 / 1e-82 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58848 282 / 1e-80 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 282 / 1e-80 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020016 [exp] 564 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 548 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 544 / 2e-179 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 539 / 2e-177 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 528 / 2e-173 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 482 / 2e-155 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 465 / 8e-149 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 449 / 4e-143 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 314 / 5e-96 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 1135 / 0 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 615 / 0 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 581 / 0 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 577 / 0 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 562 / 0 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 562 / 0 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 558 / 0 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 546 / 3e-180 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 544 / 7e-180 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 530 / 1e-174 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10014922 pacid=23152721 polypeptide=Lus10014922 locus=Lus10014922.g ID=Lus10014922.BGIv1.0 annot-version=v1.0 ATGGCAGATGGGGCTGTGAATTTCTTGCTGGACAAGCTCACAAGCATCCTGCACCAGAAGGCATCACTGCTGGGAAACGTAGGGGAAGAGGTGGAAGAGA TCAAGCTCGAACTGGAGAGCATGAGATCGTTCATAAGAGATGCAGAGCGACGGATGGAGATGAGCGAGTCGATCGAGACATGGGTGAGGCAGGTACGAGA AGTGGCCTACGAAGTTGAGGACATTGTAGACGAATACCTTCACCACCACAGCCACAGCAACAATTATGACGGTCCGAGAAGAAATGGGCTCGGACTCAAG GGTTTCGTCAAGGAAGTGTTGAAGTTCCCGAAGACCATAGCTTCAAGGCACCAGATCGCGTCAAAGCTGCAGGCTGTGAAAGCTAAAGTCTTTGACGTCT CCGAGAGAAGCAAGAGGTACGGGTTTGATCGGCTGGAAGAAGGTAATAAAGGAGGAGCAAATGATGTTGATAGGTGGCTTAAGTATGGAGGATCGAGCTT TGTGGACGAAGACGATATTGTTGGGATGGAAGCAAGTACTGAGGACCTAGTGAAATGGGTAATGGATGATGAGCCAAAGAGGCGGATTGTATCAATTGTT GGAATGGGGGGATTGGGGAAGACTACTTTGGTCTCTAAGGTTTATAACGATCAAGGAATCAAGAGAGGTTTCGATTGTTGTTCATGGATCTCCGTTTCTC AAACCAATGGAGTCAGCGAGTTACTGAAAAGCATGATCAAAGAACTCTTCGCTTCTGCGCAAGTGATGATCACTAACGACCTGGGATCGATGAGCTACAG ACAGCTTCTCAGTATGCTGATTGACTATCTCCATCAAAGAAAATACTTCATTGTTCTTGACGACGTGTGGAGCATCGATCTTTGGAGCATAATTCGCGGA GCGTTCCCAAGCAACAAGAACGGCAGCAGAATCGTGCTCACTACAAGGAACGAGAATGTGGCTACTTCTGTCGGGATCGGAAGCCATGTGCACAGGCTTC AGCCGCTCGACGAGAAAGATGCATGGACTCTCTTCTGCAAAAGAGCATTCTCGAATAATAGTATCGAGAATCCTCCGAACTCCTGCTGCCCAAATGAGCT GAGGCCTGTATCGGAGGCCATACTGAGGAAATGTGATGGATTGCCCCTTGCAATAGTGGCACTCGGGGGCTTATTATGTGCAAGAAAGAAGACAGTTATG GAGTGGAAGAAAGTCTATGACAGCCTCAACTGGCAACTGAATAACAACCCGGTGCTTGAACAGGTGAAAGGAATCTTGCTTCTCAGTTTCAACGATCTCC CGTTTTACCTCAAGCACTGCTTCCTGCACTGCTGCGTGTTTCGCGATGGCTGCACGATAAAGAGGAAGAGTCTGGTTCATTTGTGGGTGGCGGAGGGCTT CGTCCGAGAAAGGAAAGGGATGACAATGGAGGAGACAGCAGAGGAGTACCTAACCGAACTCGTTCTTCGCAGCATGATCCAAGTCACGGGGACTGACGAT GCTGGAAGAATGAAAGTGTGTCGAGTCCACGATGTCATGAGGGAGCTAGCTTTGACAACATCTGCCAAAGAGAACTTCTGTGCAGCTTATGATCATAGCA AGAACCGTGCAGGTAAAATCCATCGGTTGTCGGTTTACACCACTTCTGAAAACATGAGATTCAGCAGCAGTACCTTGCAGCATCTTCGCTCGTTCTTCAT TTTTGCGCCGTCTTTCTCTCTCGAGCCTGTGGTACCGAAGTTCAGATTGCTGAGAGTGCTTTGTCTCGAAGGGGTTCCGGTTGAAACCGTACCAAGCTCA GTTCTCGAGCTCTTCAATCTAAGGTACTTAAACTTAAGGAACACTTGCATAAAGAAGCTACCTCAGTCTATGGAAAAGCTAAGCAACTTACAGACACTTG ATGTGAAGGGTACATATATGCAGAAGCTGCCAAGTGGCGTGTCAAAGCTAACAAATCTGAGACATTTGCTCGTGAATCGTCCCGAAAATGGGGTTTTCAC TGGTTTGCCAGCTCCGTCCGGCCTGTGGAACATCAAAGGCTTACAGACTCTAGCAAGCGTCGAAGCAGACGAAGAGCTAATCAGCCACATCAGCAACTTG ACTGAACTGAGACGGCTCGAGATCACCAAGTTGAGTGCTTGTCAAGGAAACAGTCTATGCAGCGCGATACAAAGGATGACCGGACTGACTGACTTGAGAT TGATTTCCATCACACCAGATGAAGAGCTTCATCTGGGTTCTTTACACCTGCCACCAGTGTTCCTCCAGAAGCTGACATTGTCCGGATCGTTGAACAACGG TCAAATACCTCCCTGGCTTAGCTCTAGCTCGACTCCGAATCTTACCCATCTGCATCTGATTCATTCATCTGTTAAATTAGACATACTGTTCTCCCTCCAT GGAATGGCCAGCTTAGTAGTCCTCGAACTGGAGGAGGCGTTCCATGGCGAGTTGTTGCTGTTCAAGTCGGGCCAGTTTCCTCGGCTTGTGAAGCTGAAGC TCGCAGAGCTTCAGTGGTTAGATAGCGTGGTTATCGAAGAAGGTTCGGTTCCGAACTTAAGGGAGCTCTCTCTGGTTCGTTGCTTGATGCTGAAGTCGGT GCCTTGTGGGATTCGGCATCTCGGGTTTCTTCAGAAGCTGCATTTGGAGGACATGGATGAAGAACTTGAACAAGGGTTGAGGAATTATATAGGTGAGAAT CAGGAGAATGTGATCCATGTAACATGTACTAGTAGTTAG
AA sequence Show only first row Show all	>Lus10014922 pacid=23152721 polypeptide=Lus10014922 locus=Lus10014922.g ID=Lus10014922.BGIv1.0 annot-version=v1.0 MADGAVNFLLDKLTSILHQKASLLGNVGEEVEEIKLELESMRSFIRDAERRMEMSESIETWVRQVREVAYEVEDIVDEYLHHHSHSNNYDGPRRNGLGLK GFVKEVLKFPKTIASRHQIASKLQAVKAKVFDVSERSKRYGFDRLEEGNKGGANDVDRWLKYGGSSFVDEDDIVGMEASTEDLVKWVMDDEPKRRIVSIV GMGGLGKTTLVSKVYNDQGIKRGFDCCSWISVSQTNGVSELLKSMIKELFASAQVMITNDLGSMSYRQLLSMLIDYLHQRKYFIVLDDVWSIDLWSIIRG AFPSNKNGSRIVLTTRNENVATSVGIGSHVHRLQPLDEKDAWTLFCKRAFSNNSIENPPNSCCPNELRPVSEAILRKCDGLPLAIVALGGLLCARKKTVM EWKKVYDSLNWQLNNNPVLEQVKGILLLSFNDLPFYLKHCFLHCCVFRDGCTIKRKSLVHLWVAEGFVRERKGMTMEETAEEYLTELVLRSMIQVTGTDD AGRMKVCRVHDVMRELALTTSAKENFCAAYDHSKNRAGKIHRLSVYTTSENMRFSSSTLQHLRSFFIFAPSFSLEPVVPKFRLLRVLCLEGVPVETVPSS VLELFNLRYLNLRNTCIKKLPQSMEKLSNLQTLDVKGTYMQKLPSGVSKLTNLRHLLVNRPENGVFTGLPAPSGLWNIKGLQTLASVEADEELISHISNL TELRRLEITKLSACQGNSLCSAIQRMTGLTDLRLISITPDEELHLGSLHLPPVFLQKLTLSGSLNNGQIPPWLSSSSTPNLTHLHLIHSSVKLDILFSLH GMASLVVLELEEAFHGELLLFKSGQFPRLVKLKLAELQWLDSVVIEEGSVPNLRELSLVRCLMLKSVPCGIRHLGFLQKLHLEDMDEELEQGLRNYIGEN QENVIHVTCTSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	0	1
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	4.0	0.9073
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	7.7	0.9174
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	9.1	0.9275
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	9.4	0.9117
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	12.2	0.8758
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	12.3	0.9230
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	15.9	0.8999
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	18.5	0.8979
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	20.8	0.9053
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10020883 [exp]	22.2	0.9109

Compare expression of checked genes

Lus10014922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.