Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46410 86 / 1e-23 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT5G53200 85 / 6e-23 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT1G01380 82 / 5e-22 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT4G01060 79 / 3e-21 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT2G30420 78 / 2e-20 MYB ETC2 ENHANCER OF TRY AND CPC 2, Homeodomain-like superfamily protein (.1) AT2G30432 77 / 5e-20 MYB TCL1 TRICHOMELESS1, Homeodomain-like superfamily protein (.1) AT2G30424 77 / 7e-20 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1) AT5G52600 58 / 1e-11 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 56 / 8e-11 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT3G13540 56 / 9e-11 MYB ATMYB5, ATM2 myb domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038822 [exp] 135 / 2e-43 AT5G53200 96 / 1e-27 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Lus10005949 [exp] 76 / 1e-19 AT4G01060 91 / 2e-25 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) Lus10018414 [exp] 66 / 3e-14 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10007643 [exp] 61 / 9e-14 AT2G46410 65 / 3e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10018366 [exp] 61 / 1e-13 AT2G46410 67 / 2e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10006647 [exp] 60 / 3e-12 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10038092 [exp] 60 / 4e-12 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10039173 [exp] 57 / 5e-11 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10001043 [exp] 54 / 2e-10 AT1G22640 119 / 1e-33 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168900 [exp] 86 / 3e-23 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.012G031200 [exp] 87 / 4e-23 AT5G53200 102 / 6e-29 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.014G096300 [exp] 83 / 3e-22 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.015G022000 [exp] 82 / 3e-22 AT5G53200 104 / 2e-30 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 67 / 3e-16 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 64 / 3e-15 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 64 / 4e-15 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G021300 [exp] 63 / 7e-15 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 63 / 8e-15 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.018G127700 [exp] 58 / 2e-11 AT5G52600 201 / 2e-65 myb domain protein 82 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014933 pacid=23152747 polypeptide=Lus10014933 locus=Lus10014933.g ID=Lus10014933.BGIv1.0 annot-version=v1.0 ATGGGGAGTTGGTCTAAAGCTGATAATAAAGACAGTATCAGCAGCAGCTCTGTTTCTCAAGAGGTCAGCAGCCGCGAATGGGAGGCGGTGAGGATGAATG AGCAGGAAGAAGACCTCGTCTTCAGAATGTACAGGCTTGTTGGGAAGAGGTGGGATTTAATCGCTGGGAGGATTCCTGGCAGATCGGCGGAGGAAGTCGA GAGGTTTTGGATCATGAAACACCATGGAAAGACCAATGTGGATGATCATGCACAATGA
AA sequence Show only first row Show all	>Lus10014933 pacid=23152747 polypeptide=Lus10014933 locus=Lus10014933.g ID=Lus10014933.BGIv1.0 annot-version=v1.0 MGSWSKADNKDSISSSSVSQEVSSREWEAVRMNEQEEDLVFRMYRLVGKRWDLIAGRIPGRSAEEVERFWIMKHHGKTNVDDHAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10014933 [exp]	0	1
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	7.5	0.7671
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	8.4	0.7754
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	13.0	0.7429
					Lus10041373 [exp]	16.5	0.7511
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	16.6	0.7673
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	18.3	0.7561
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	23.7	0.7061
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	24.0	0.7657
					Lus10022997 [exp]	25.0	0.7305
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	26.2	0.7549

Compare expression of checked genes

Lus10014933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.