Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 417 / 7e-147 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 417 / 9e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 395 / 4e-138 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 332 / 5e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 327 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 246 / 2e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 246 / 3e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 225 / 4e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 110 / 5e-27 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 106 / 9e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038857 [exp] 658 / 0 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032282 [exp] 425 / 7e-150 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 425 / 8e-150 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 422 / 1e-148 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 417 / 7e-147 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 416 / 2e-146 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028781 [exp] 404 / 9e-142 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 400 / 5e-140 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 398 / 2e-139 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 434 / 1e-153 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 427 / 6e-151 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 426 / 6e-150 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 422 / 8e-149 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 399 / 2e-139 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 393 / 2e-137 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 346 / 1e-118 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 231 / 1e-73 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 231 / 1e-73 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 228 / 4e-72 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014975 pacid=23152770 polypeptide=Lus10014975 locus=Lus10014975.g ID=Lus10014975.BGIv1.0 annot-version=v1.0 ATGTGGCTGTTTAAGAAGAACGGCCCATCTGGGTTCTCTTCCTCTTCCACCGCCGAGGAAGGCACTGCCGGGCTTGCACCCTCTTCTCTCACCGCCACTG TTCCATCATTCCCGCTTCCGGTCGCTGGGATGTGGCTGTTTAAGAAGAACGGCCCATCTGGGTTCTCTTCCTCTTCCACCGCCGAGGAAGTCACTGCCGG GATTGACGCCTCTTCTCTCACCGCCATTGTTACAGGAGCATCCAGTGGGATTGGTGCCGAAACAGCCCGAGTCCTCGCGCTTCGAGGCGTTAGCGTGATC ATGGCGGTACGGAGTATGGACTCGGCTAAGAGAGTGAAGGAAGAAATAGTAAAACAAGTCCCTTCTGCTAAGATTGACGCCATGGAATTGGACCTTAGCT CGTTGGCTTCTGTCAGGAAATTCGCTTCGGCTTTCAACTCCTCTGGCCGCCGCCTCAACCTCTTAATTAACAATGCAGGTGTAATGGCGACTCCCTTCAC CCTTTCCAAGGACAACATTGAGCTGCAGTTTGCGACGAATCATTTGGGTCATTTTCTCCTAACCAGCCTGCTACTGGAAAACATGAAGAAAACCGCAGTC GAAAGCAAGAAGGAAGGGAGAATCGTAGTGGTTGCATCAGAAGCTCACCGGGCTACTTACCCTAACGGTATTCGTTTCGACAAGATCAACGACAAAACAG GCTATTCTTCTTACCTTGCATACGGGCAATCGAAGCTCTCGAATATCTTGCACGCGAACGAGCTCTCCAGACGCCTAAAGGAGGAAGGCGCGAATGTAAC AGCGAATTCTCTTCACCCGGGAATAATCGCCACCAACCTTTTCCGGCACATGACCATCGTTTCTGGCATTGTAGACGCGTTCGGAAAGCTGGCATTCAAA AACGTTCAACAGGGCGCAGCTACAACTTGCTATCTGGCATTGCATCCGCAGGTGAAAGGGATAAGTGGTGAGTACTTCTCAGACAGTAATCTGGCAAAGC CAACTGCTTTCGGGAAAGATGATGCCTTGGGGAAGAAGCTTTGGGACTTCAGCTCAGATTTGGTCAAGTAA
AA sequence Show only first row Show all	>Lus10014975 pacid=23152770 polypeptide=Lus10014975 locus=Lus10014975.g ID=Lus10014975.BGIv1.0 annot-version=v1.0 MWLFKKNGPSGFSSSSTAEEGTAGLAPSSLTATVPSFPLPVAGMWLFKKNGPSGFSSSSTAEEVTAGIDASSLTAIVTGASSGIGAETARVLALRGVSVI MAVRSMDSAKRVKEEIVKQVPSAKIDAMELDLSSLASVRKFASAFNSSGRRLNLLINNAGVMATPFTLSKDNIELQFATNHLGHFLLTSLLLENMKKTAV ESKKEGRIVVVASEAHRATYPNGIRFDKINDKTGYSSYLAYGQSKLSNILHANELSRRLKEEGANVTANSLHPGIIATNLFRHMTIVSGIVDAFGKLAFK NVQQGAATTCYLALHPQVKGISGEYFSDSNLAKPTAFGKDDALGKKLWDFSSDLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10014975 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	1.0	0.9663
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	1.4	0.9658
AT4G01935			unknown protein		Lus10010062 [exp]	2.8	0.9353
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	4.2	0.9474
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10027461 [exp]	5.5	0.9246
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10023149 [exp]	5.9	0.9332
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	8.2	0.9119
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	8.8	0.9259
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	11.2	0.9010
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	11.6	0.8985

Compare expression of checked genes

Lus10014975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.