Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 255 / 6e-80 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT2G28550 247 / 1e-76 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G67180 239 / 7e-75 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 188 / 9e-54 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 144 / 1e-39 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT1G72570 145 / 1e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 147 / 2e-38 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 145 / 1e-37 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 145 / 1e-37 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 140 / 7e-36 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023165 [exp] 666 / 0 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 444 / 8e-153 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 374 / 2e-127 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 252 / 4e-78 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019331 [exp] 243 / 5e-75 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 239 / 5e-74 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 240 / 8e-74 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 234 / 1e-70 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 218 / 6e-65 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084500 [exp] 350 / 7e-116 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 345 / 7e-114 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 265 / 5e-83 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 246 / 2e-75 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 243 / 8e-75 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.005G140700 [exp] 242 / 3e-74 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.003G205700 [exp] 146 / 3e-38 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 146 / 5e-38 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G185300 [exp] 139 / 4e-37 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.014G012200 [exp] 144 / 7e-37 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10015055 pacid=23171548 polypeptide=Lus10015055 locus=Lus10015055.g ID=Lus10015055.BGIv1.0 annot-version=v1.0 ATGCTGGTAGATCTTAACCTTACCATGGTTTCCCCCGCTGTCAACCGAAATTCTTTCGCCTCCGGTGATAATATGAAGCGGCGTTTCGACTTCTCTCCCT CTAACTACCAACTCGACAGCTCCGGGAGCTTTAATTCCTCCTCGGTTATTAACGTCGACTCTAACAGTAACGCTAATGCTGTTGTTCCAGGAGACGACGA CTCTTGCTCTATTCATTATAATCACGGTGATCTGTTTGGCTACAGTTTCCGTATCTTGACCGAGGACCAGCGAGCCAGTAAGAAAAAGATGGCTGTGGAG GAAGATGATGATAAGAACAATCACAATGACCGTACTATTCAGCTGTTCCCGGTTTCTGAGGGTGGAGTAGGACGAGGACGAGGAGTGAATGCGGTCGCTC AGTGTTTCGGTGCCAGTAAGGTGTGGTTAGATCTCGGTGGCAGGGAGGTTGAGCACGGCGGTCTTGCGGAGAAGGTTGTGGCGGCGACGGCTCAAGTTCA GCAGCAGCAGCAGCCGAAGCCTCCGGCAAAGAAGAACCGACGAGGTCCTCGGTCCAAGAGCTCGCAGTATCGGGGCGTAACGTTTTACCGGAGGACTGGC CGTTGGGAATCGCACATTTGGGATTGCGGGAAGCAAGTTTATCTTGGGGGATTCGACACTGCTCATGCTGCAGCTAGAGCGTATGATCGAGCTGCGATCA AATTCCGTGGAGTGGATGCTGATATCAACTATAATGTCAGCGATTACGATGATGATATTAAGCAGATGAGTAACTTCACAAAGGAGGAATTTGTTCACAT ACTCCGTCGCCAGAGCACTGGATTCTCAAGGGGAAGCTCCAAGTTCAGAGGAGTCACACACCATAAATGTGGGAAATGGGAAGCCCGGACGGGGCAGCTT CTGGGCAAGAAGTACATATATCTTGGCCTTTATGATACCGAGATAGAAGCTGCGAGGGCTTATGACATGGCTGCCATCGATTGCAATGGTAGGGATGCGG TCACCAATTTTGAGCCTAACTCATATGATGGAGAGATCATGTCTGAGGTCAAGCCTGAAGATCAAAGTCTTGATCTGAACTTGGGTATTGCTCCTCCTGA TGCACATGAAGGCAGAAGGGTAAAAAGCAATGCAAGTAGCTTTAGCATCCCGGTTGGCCTGGACAAAGACTCAACGACCTTGAACTCTGCTTCAGGAACA ATGAACGGTCATAATCAACTATCCCATGGGCTTCCCATGGAAACTGAAGTTTGTCCAGCTAGGGATGGTATAAATGGCTGTCACTTTCCAGTCTATAAGG AAAGAGCAATGGAGAAGAGGGAAGGAGGAGTGGACCCTTTGTTAAACTGGGCATGGAAACTGCAAAGCCCATACGACAAAGAGAAGCCACAGCCATTCTT CTCCTCCTCTGCAGCATCATCAGGATTCTCGTCAGTCTTCGACAGTTACTACTGCGCCTAG
AA sequence Show only first row Show all	>Lus10015055 pacid=23171548 polypeptide=Lus10015055 locus=Lus10015055.g ID=Lus10015055.BGIv1.0 annot-version=v1.0 MLVDLNLTMVSPAVNRNSFASGDNMKRRFDFSPSNYQLDSSGSFNSSSVINVDSNSNANAVVPGDDDSCSIHYNHGDLFGYSFRILTEDQRASKKKMAVE EDDDKNNHNDRTIQLFPVSEGGVGRGRGVNAVAQCFGASKVWLDLGGREVEHGGLAEKVVAATAQVQQQQQPKPPAKKNRRGPRSKSSQYRGVTFYRRTG RWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINYNVSDYDDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKFRGVTHHKCGKWEARTGQL LGKKYIYLGLYDTEIEAARAYDMAAIDCNGRDAVTNFEPNSYDGEIMSEVKPEDQSLDLNLGIAPPDAHEGRRVKSNASSFSIPVGLDKDSTTLNSASGT MNGHNQLSHGLPMETEVCPARDGINGCHFPVYKERAMEKREGGVDPLLNWAWKLQSPYDKEKPQPFFSSSAASSGFSSVFDSYYCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	1.0	0.9135
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	1.4	0.8808
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	1.7	0.8754
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	3.9	0.8255
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	4.2	0.8514
					Lus10024691 [exp]	6.5	0.8274
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	8.7	0.8649
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	8.9	0.8378
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	9.4	0.8352
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	11.7	0.8734

Compare expression of checked genes

Lus10015055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.