Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 762 / 0 AAA-type ATPase family protein (.1) AT5G45720 725 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 305 / 2e-87 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 292 / 3e-83 AAA-type ATPase family protein (.1) AT4G24790 278 / 9e-80 AAA-type ATPase family protein (.1.2) AT1G21690 76 / 3e-14 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 58 / 2e-08 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005422 [exp] 1559 / 0 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 935 / 0 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 917 / 0 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 306 / 1e-87 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10013665 [exp] 275 / 1e-78 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10033035 [exp] 273 / 4e-78 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 211 / 7e-56 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10018144 [exp] 62 / 1e-09 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 61 / 3e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071300 [exp] 967 / 0 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 932 / 0 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 317 / 3e-91 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 313 / 3e-90 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 291 / 1e-83 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 270 / 3e-76 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G181300 [exp] 74 / 7e-14 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 60 / 4e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015234 pacid=23178813 polypeptide=Lus10015234 locus=Lus10015234.g ID=Lus10015234.BGIv1.0 annot-version=v1.0 ATGACCAAGCCTGTTAGAACTAGTAGGATCCTCAAGGATGCAAATGGTGTTGACATCGACGACCATCTTCGCAACCACATTCACTTTACCAATTGCATCC ACCTCAAGAACCATATCCATAAGCAAACCCCTACTATGTTATTAGGCGACCGGTCCTTGGTTCGGGACCTCATTGTTCTTCGGAGGTCGCGCTCGTTGAA GGACCCTTCTGCGAGCCCTCCTCCTCCTCCTTCGTGGCAACATTTGACCCCATTTGTTGTTGAATCGTTACCCACGAATGGCGACCAGGATCAGCACGTT GTTCATCCTGGTAGTAGTAGTAGCAGGAGGTTGTCTGGCGGTGGTAGCTCGATGCATTTTTCGAGCCATCCATTGTCTGCGAAGGTTGTTCCTGATGATG GCATTTCGGTGGATTCTGGATCGAAAGATGGGAAGAGTAGAAGGAAGCCGAAGAAGCATAGTGAAGATGTACATATGGATAGTGATGTAGCATCATCATG TTCTAAGATCCATCATAAGGGTAAAACTGAGTCGAGAAATCGTGGATATGGTCGAGTTAGTCGGGTTAAGAGCAGGCGTAGGGGCGGTGGTGCCAGACAG AGTCGTGTCTCAGCTTCTAGAGACAATGCAGGTCAGACAGAGATGTCTATCGGTTCGAATTCGTTAGCTCGTAGTTCAGTATGGCCGAGGCATCACATGG ATAATCAGGGCGAGGACGAAGAAGAAGATTTATATGGTGATCAGGACGTGACACAAGATCCCCGAAACAGATGTGGGATTCCGTGGAATTGGTCGAGAAT TCACGACCGTAGTAGAACGTTTTTCGACAGGGCAGGAAGGAGCCTGTCCTGTGGTATCTCGGAGTCGAGGTCAAGGCGAGGTAGTAGGAACATTGATGAT GATGACACGGTGATGCTATCCGGTCAATCGAGTTCCGAATCTCGGTCTGGTTCAGGTGGTTGGGTTCATGATTACTCCGGTGAGCTTGGTTTCTATGCCA ATAGCTTGCTGAGCAAGAAAGACAGGCAGAACCAGAATCACAACTGCAGGCATCAGAATCTGACACAGAAGTACATGCCTAGATTCTTTAAAGACCTGGT TGGGCAGAATCTTGTCTGCCAAGCTCTTTCCAATGCAGTAATCCGCAGGAAAGTCGGATTCTTGTACGTGTTTTACGGACCTCATGGCACCGGGAAAACC TCTTCCGCTCGAATTTTTGCTCGAGCTTTGAATTGTCAGTCCATGGAGCCACCTAAACCCTGTGGCAATTGCAACTCTTGCAACGAAACCGGGAAAAACC GATACATTCGAGAAATCGGTCCATCGAGTAATTTCGACTCCAAAACCGTCATGGATCTTCTTCGCAATGCGATCACATCTCATCACTACAAAGTTATCAT CTTTGATGATTGCGATGCATTATCCCCCGATTGCTGGACCGCAATATCGAAGGTCGTCGATCGAGCTCCTAGAAGAGTAGTTTTCATTCTCGTAAGTTCG AGTCTCGATGCTTTGCCTCACATGATCATATCTAGGTGCCAGAAATTCATCTTCCCAAAGCTGAAAGATGCAGACATTGTATCCACTCTGGCCCGGATTT CGGCCAGAGAAGATATCGAAATCGATAAGGACGCGTTGAAACTGATCGCTTCACGGTCAGATGGATCGCTGAGAGATGCTGAGATGACTCTCGAGCAACT CTGCCTCCTAGGACAACCGATCTACGTGTCTCTAGTTCAAGAGCTGGTTGGGCTGATTTCAGACGAGAAGTTGGTCGATCTTCTTGATATGGCGTTGTCA GCAGACACGGTGAACACTGTCAAGAGTTTACGAGTCGTTATGGAGGCCGGAGTCGAGCCTTTAGCTCTGATGTCTCAACTTGCTACTGTTATAACTGATA TCTTAGCTGGTTCATATGATTTCAGCAGAGATAGACATAGAAGGAAGTTCTTCAAACGACAACCGATGACGAAGGAGGAAATGGAGAAGTTGCGACAAGC GTTGAAGACTCTGTCGGAGGCCGAGAAGCAACTCAGGACATCGAACGACAAGTTGACATGGCTTACCGCTGCATTGCTTCAACTCGCGCCCTATCAACAA TACTCGACTGAAGCACCCGATTCCGGTAATTTTCCTGGAAGTAGAACGAAAAACGGTACTGACATGGATAGGAAACGGAACTCTGTGTCTTCTAATGCAG CTAGGGCGACGACTGAGAAGCCAGTTCCAAGCCAGAGTCGAATCGGGTATGACGAAATTTGGGTTGACGTGATTGAGAAGATTCAGATCAAGACTATAAA AGAGTTCTTGTATCATGAAGGAAAGCTGGTTTCTATCAATTTTGGTACAGAACCGACGGTGCAGTTGATGTTTACCTCACAGCTAACGAAATCAAAGGCG GAGAAGTTCATGGCCTACATTTTACGGGCGTTCGAATCGGTTCTCGGGTCTCCAGTGATGCTCGAAATCAGAAGCAAACCGAACAGCAAAGGCAGACATA CACCACTTGGCAAAACCAGACCACCGGAAGAATCTGTCGATGCCGGTAGAGATGAGATCGTTGAAGTGCCACCGGCTCACAAACATGCAGATGTTCCACG TAAGCAAGCAATTCCCGGTCCGACAACAAGTTCCTCTGTGGTGGGTACGAGAAGAAATGGAGAAGTAAACCAATGCAGGAGCCTGGTCAAAGGCAAGGTG TCGTTAGCTGCTGTGATTCAGCAGGTCGAAGGATTTACGCAACCGGATAGATGGTCAAGACGGAAACCGATCACGATTGCTGAAAAGATCGAACGAGAAA ACTTGAGAATGGAGGCTAGATCCCGAACCACGCTTTGCTGGAAAGCATCAAGAGCGACTCACAGGAAGCTTTCTCGTTCAAAGACCAGGAAGCGAAGGCC GCAACCACTGCTGAAGCTGATCTCTTGCGGGGAATGTCTCTCCAGTAAACCCAGATCTCCCACGTAG
AA sequence Show only first row Show all	>Lus10015234 pacid=23178813 polypeptide=Lus10015234 locus=Lus10015234.g ID=Lus10015234.BGIv1.0 annot-version=v1.0 MTKPVRTSRILKDANGVDIDDHLRNHIHFTNCIHLKNHIHKQTPTMLLGDRSLVRDLIVLRRSRSLKDPSASPPPPPSWQHLTPFVVESLPTNGDQDQHV VHPGSSSSRRLSGGGSSMHFSSHPLSAKVVPDDGISVDSGSKDGKSRRKPKKHSEDVHMDSDVASSCSKIHHKGKTESRNRGYGRVSRVKSRRRGGGARQ SRVSASRDNAGQTEMSIGSNSLARSSVWPRHHMDNQGEDEEEDLYGDQDVTQDPRNRCGIPWNWSRIHDRSRTFFDRAGRSLSCGISESRSRRGSRNIDD DDTVMLSGQSSSESRSGSGGWVHDYSGELGFYANSLLSKKDRQNQNHNCRHQNLTQKYMPRFFKDLVGQNLVCQALSNAVIRRKVGFLYVFYGPHGTGKT SSARIFARALNCQSMEPPKPCGNCNSCNETGKNRYIREIGPSSNFDSKTVMDLLRNAITSHHYKVIIFDDCDALSPDCWTAISKVVDRAPRRVVFILVSS SLDALPHMIISRCQKFIFPKLKDADIVSTLARISAREDIEIDKDALKLIASRSDGSLRDAEMTLEQLCLLGQPIYVSLVQELVGLISDEKLVDLLDMALS ADTVNTVKSLRVVMEAGVEPLALMSQLATVITDILAGSYDFSRDRHRRKFFKRQPMTKEEMEKLRQALKTLSEAEKQLRTSNDKLTWLTAALLQLAPYQQ YSTEAPDSGNFPGSRTKNGTDMDRKRNSVSSNAARATTEKPVPSQSRIGYDEIWVDVIEKIQIKTIKEFLYHEGKLVSINFGTEPTVQLMFTSQLTKSKA EKFMAYILRAFESVLGSPVMLEIRSKPNSKGRHTPLGKTRPPEESVDAGRDEIVEVPPAHKHADVPRKQAIPGPTTSSSVVGTRRNGEVNQCRSLVKGKV SLAAVIQQVEGFTQPDRWSRRKPITIAEKIERENLRMEARSRTTLCWKASRATHRKLSRSKTRKRRPQPLLKLISCGECLSSKPRSPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	0	1
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	1.4	0.9071
AT1G50660			unknown protein		Lus10040076 [exp]	2.0	0.8912
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	3.0	0.8794
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	4.2	0.8995
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	6.0	0.8720
AT3G60660			unknown protein		Lus10036493 [exp]	6.2	0.8493
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	7.2	0.8716
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	9.4	0.8623
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	9.5	0.8824
AT3G53320			unknown protein		Lus10026478 [exp]	10.2	0.8260

Compare expression of checked genes

Lus10015234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.