Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43410 45 / 4e-06 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23220 42 / 3e-05 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G47220 43 / 4e-05 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17490 43 / 4e-05 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT4G17500 43 / 5e-05 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT1G04370 42 / 5e-05 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT5G47230 42 / 8e-05 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G51190 40 / 0.0003 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 40 / 0.0005 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025433 [exp] 73 / 9e-17 AT1G28540 111 / 7e-33 unknown protein Lus10024553 [exp] 52 / 2e-09 AT1G28540 48 / 6e-09 unknown protein Lus10025430 [exp] 52 / 2e-08 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10005285 [exp] 49 / 1e-07 AT3G23240 120 / 1e-34 ethylene response factor 1 (.1) Lus10013959 [exp] 47 / 7e-07 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10004368 [exp] 42 / 8e-05 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10011829 [exp] 42 / 0.0001 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10029333 [exp] 41 / 0.0002 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10003562 [exp] 41 / 0.0002 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061700 [exp] 52 / 1e-08 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 49 / 2e-07 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.003G150800 [exp] 44 / 1e-05 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 44 / 2e-05 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 44 / 3e-05 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079900 [exp] 42 / 6e-05 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G150700 [exp] 42 / 0.0001 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 42 / 0.0001 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154200 [exp] 42 / 0.0001 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154100 [exp] 42 / 0.0001 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10015296 pacid=23178751 polypeptide=Lus10015296 locus=Lus10015296.g ID=Lus10015296.BGIv1.0 annot-version=v1.0 ATGGCTGAACCGAAAAAACCCAATTCTCCTTCTCCGACGGAGCTCAAGGACGTCGGAAAAAAGAACTGCAACAACGCCAGCTACTCAGGGCAGAAGCTCC ACTACCCGAACCCGCCGGAGGGGCAACGAGCTACCTTTCAACGAGAACGATTCTCAAGACATGGTGATTTACCAGATGATGAGCGAAGGCACGGGGCGAG GGTCTGGCTGGGGACTTACGAGACGGCGGAGGAAGCGGCGCTGGCGTACGATCGGGCGGCTTTCAGGATGAGGGGGTCGAAGGCTGTGCTTAATTTTCCG CCGGAGTTGGCGGCGGGGGTGGGCATCAGGGTGGCGGGAAGAAAAGGGGGGCTGCTGCGAGGAGTAGTGGTAGTAATTGTAGTAGTAGCATTAGTAATGG GGGGAGTGATGATAGGAAGGGGTCGAGGTGTGGTTCTTCAGGCGCCGCTGCAGTGTCGGAGACGTCGACGGGGAGCGGCGGCGGAACAGGGGAGTGTGAG AACAGGGGAGATGGTTATTTCGATTTTCCTATTAATGACTTTTGAATTTTGA
AA sequence Show only first row Show all	>Lus10015296 pacid=23178751 polypeptide=Lus10015296 locus=Lus10015296.g ID=Lus10015296.BGIv1.0 annot-version=v1.0 MAEPKKPNSPSPTELKDVGKKNCNNASYSGQKLHYPNPPEGQRATFQRERFSRHGDLPDDERRHGARVWLGTYETAEEAALAYDRAAFRMRGSKAVLNFP PELAAGVGIRVAGRKGGLLRGVVVVIVVVALVMGGVMIGRGRGVVLQAPLQCRRRRRGAAAEQGSVRTGEMVISIFLLMTFEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10015296 [exp]	0	1
AT1G35210			unknown protein		Lus10036476 [exp]	1.7	0.9872
AT3G48140			B12D protein (.1)		Lus10036977 [exp]	5.3	0.9798
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10024428 [exp]	6.3	0.9750
AT1G35210			unknown protein		Lus10010343 [exp]	7.7	0.9857
AT1G13360			unknown protein		Lus10041461 [exp]	11.5	0.9589
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	12.7	0.9793
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	13.6	0.9796
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	14.3	0.9809
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	17.1	0.9793
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	22.5	0.9769

Compare expression of checked genes

Lus10015296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.