Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 526 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 510 / 2e-178 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 476 / 1e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 466 / 5e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28610 433 / 1e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 430 / 8e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 430 / 3e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 422 / 2e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 413 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 345 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005256 [exp] 671 / 0 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 668 / 0 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 630 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 535 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 514 / 4e-180 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 478 / 2e-165 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 469 / 7e-162 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 442 / 7e-152 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014284 [exp] 322 / 6e-105 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 577 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 558 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 558 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 555 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 532 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 531 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 530 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 523 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 498 / 6e-174 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 390 / 1e-133 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015349 pacid=23160909 polypeptide=Lus10015349 locus=Lus10015349.g ID=Lus10015349.BGIv1.0 annot-version=v1.0 ATGGAAGTCCTGAAGCTATGGACAAACTTAGGATCCTCAATCGTGGGGCTAATGGTAGCTTGGACAATGCTTGAGAAGTACATCCCTCAGCAGCTCCGTT CACTCTTCACCGTCCACACCCAGAAGCTTTTCACCTTTTACAACCCCTACATCCGCATCCGATTCCCTGAATTCAGCGGCACTCGGTATCTCAGAAGCGA AGCATACAACGCCATCCACAACTACCTCAGCGTCCACTCCTCCCCTTCCGCCAAATCCCTCAAGGCCGACTCCCTCAAAGAAGGCCAATCCCAGTTCCTC CTCTCCATGGACGACGACGAGGAGGTCACCGACGTCTTCCAAGGCGTCAAGCTCTGGTGGGCATCCCGTAAAACTTCCCCCAAATCCCAGTCCATTAACC TCTTCCACCTTGATGACGAGGAGAAGAGGTACTACGTGCTTACGTTCCACAAGAAGGACAGGGATTTGGTTACTGGGGATTACATGGCTCATGTGATCAA GGAAGGTAGGGGAATTCTCTCCCGAAACCGACAGAAGAAGCTGTTTTCCAACAACCCCAACCGGAGCTGGAACGGCTGGAGTCCCGTCATCTTCGACCAC CCTGCCACTTTCGACACTCTGGCTATGCCCATTAAGTCCAAGGAAGCCATCATCAAAGACCTCCTCAAGTTCAGTGATGGAAAGTCCTACTACGCTAAAA TTGGCAAACCCTGGAAGCGAGGGTATCTACTGTATGGCCCTCCGGGAACAGGCAAGTCAACGATGATAGCTGCGATGGCCAACTTGTTAAACTACGACAT CTACAACCTGGAGCTGACTACAGTTAAGGACAACTCCGAGCTCATCAAGCTATTACTCGAGACTACCGGAAAATCAATCATCGTCATCGAGGATATCGAT TGCTCGCTTGATCTCACGGGCCAGAGGAACCCTAACAAGAACAACGAAGACAACGATGACGATGATGGCATTAATACACAAGGAAGTAAGAATAATGTCG TCTCCAAAGCTATCAAGGAACAAGAGAAAGAGAGCAAGAGCGACAGCAAGGTGACGTTATCGGGTCTGCTGAATTTCATAGACGGGATATGGTCGGCCTG CGGTGGAGAGAGGATCATAGTTTTCACAACGAATTACGTGGACAAGCTGGATCCGGCATTGATAAGGAGAGGGAGGATGGATATGCACATTGAGATGTCC TACTGTTGCTTCGAAGCTTTCAAGGTTCTGGCCAAGAATTATTTGGATATCGACAACAATAAACTGTTTGGGAGGATTGAGGAGCTGTTGGGGGAGATTG AGATGACGCCGGCTAGTGTTGCAGAGAACTTGTTGCCGAAATCGGCCGAGGACGGCGAGGACAAGTGCTTGAGGAACTTGGTTGAAGCGCTTGAAGCGAT CAAGCAAGACCAAGATGCTAAATTGAAAGCAGAGAGAAGGGAGAAACAGTGGCAGTGGGTTAAGAGTATCTTCTAG
AA sequence Show only first row Show all	>Lus10015349 pacid=23160909 polypeptide=Lus10015349 locus=Lus10015349.g ID=Lus10015349.BGIv1.0 annot-version=v1.0 MEVLKLWTNLGSSIVGLMVAWTMLEKYIPQQLRSLFTVHTQKLFTFYNPYIRIRFPEFSGTRYLRSEAYNAIHNYLSVHSSPSAKSLKADSLKEGQSQFL LSMDDDEEVTDVFQGVKLWWASRKTSPKSQSINLFHLDDEEKRYYVLTFHKKDRDLVTGDYMAHVIKEGRGILSRNRQKKLFSNNPNRSWNGWSPVIFDH PATFDTLAMPIKSKEAIIKDLLKFSDGKSYYAKIGKPWKRGYLLYGPPGTGKSTMIAAMANLLNYDIYNLELTTVKDNSELIKLLLETTGKSIIVIEDID CSLDLTGQRNPNKNNEDNDDDDGINTQGSKNNVVSKAIKEQEKESKSDSKVTLSGLLNFIDGIWSACGGERIIVFTTNYVDKLDPALIRRGRMDMHIEMS YCCFEAFKVLAKNYLDIDNNKLFGRIEELLGEIEMTPASVAENLLPKSAEDGEDKCLRNLVEALEAIKQDQDAKLKAERREKQWQWVKSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015349 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	4.7	0.9226
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	6.0	0.9255
AT3G48140			B12D protein (.1)		Lus10015825 [exp]	8.9	0.9093
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10008066 [exp]	14.7	0.9113
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	16.0	0.9041
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	16.1	0.9210
AT1G23300			MATE efflux family protein (.1...		Lus10026324 [exp]	24.6	0.9168
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	34.6	0.8990
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	35.6	0.8888
					Lus10008659 [exp]	36.7	0.8622

Compare expression of checked genes

Lus10015349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.