Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 407 / 4e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 389 / 3e-115 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 347 / 7e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 344 / 1e-99 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 341 / 1e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 341 / 2e-98 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 334 / 1e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 337 / 3e-97 TAO1 target of AVRB operation1 (.1) AT1G69550 335 / 2e-95 disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 1584 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 1108 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 830 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 818 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 806 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 776 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 731 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 689 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10004075 [exp] 640 / 0 AT4G12010 348 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 575 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 559 / 8e-180 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 515 / 3e-162 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 506 / 2e-159 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 505 / 8e-159 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 496 / 3e-154 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 493 / 9e-152 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 475 / 6e-148 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 478 / 7e-148 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 450 / 3e-135 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10015350 pacid=23160919 polypeptide=Lus10015350 locus=Lus10015350.g ID=Lus10015350.BGIv1.0 annot-version=v1.0 ATGGATTCAACTTCTTGTTCTTCATCAAGAAGGTCGGGATCCGTGCCATGGGAGTACGACGTGTTCCTGTGCTTCCGCGGCGAGACCCGTTGCTCCTTCA CCAGCCACGTCATGGCGGCGCTGTCTGAGATGAAAATTAAGACTTTCATCGACACTATGCTTAGGAAAGGGGATAGCATAGCCGAGTTGCATTCCGTGCT TAAGCGGTCTGCGGTTTCGGTCATTATATTCTCCGAGAGGTTCGCCGACTCTCCCTGGTGCCTTGATGAGGTGGCCACCATTTCCCGTGGCGTGCAAGAA TTCGGCCACAGAGTCTTGCCCATTTTCTACAACGTACATCCCTCTGAGGTCGGCGACGACGCCGGATGTTACGCTGACATGATCAACAAGCACGATCGCT CCCCGCCGGTGAAGATCAAGTGGAGAACTGCGCTCAAGGATATTGTTGACAAGGCCGGCCTTACTTCCAACCAGATAAGACTGGAGTCAGAATTGATAAA GGCAATAGTGGAGAACGTGTTGAAAGAACTAAACGAGATGTCTCCAAGTGTGGAACAGAAGAACCTAATAGGCATGGATTCTCGCGTGTGGGAGGTGGAA AGATTATTAGACATAAACCGGTCTGATGAGATTCGCGTTGTTGGGCTATGGGGCATGCCTGGCATCGGCAAGACCAGACTAGCCAAGGTGTTGTACCAAC GGTTTACCAATTTCTCAAGACGAGATTCCGACGACGGTGAAGGTTATAACAAGCATTACTTCGTCCAAAACATTAAAGGGCGACAGGATAACATAGAAGG AATCCAGAAGGAGCTCTACTCCACTCTCCTTTCTGAGCAAGACCAAAACATCACTTGTGGTGACTTGGAGACCAGTTACCGCAGGGCTCGCCTTTCTCGC TTGAAAGTTTTCATCGTCCTCGATGATGTCCATACAATTCTCTTGCTCGAACAGTTACTGCTCGGCGATGTCTTGAACCTCACCAAGCTATTTGCTCTGG GGAGTAGAATCATCGTCACCACTACCAATAAGAGGGTGCTCGATTATGCAATGGCTAAGATCTACCACGTTGAGAAGCTCAATACTCAAGACTCACTTCG CCTTTTCAGCTCCTGCTCCTTTAAGAGGGAGAATCCATATGCGGAAATGAGGAACTTGTCGATTACGGCAGTGGAATATTGCAAGGGGAATCCACTAGCA TTAAGGCTATTAGGGCGGATGTTGTCTGGGAAGAAGAAGAGTTATTGGGAAAGTTTTTTGGAACGATTGAGGAAGAATCCAGAGCCTCTCGAGATTCATG ATCTTCTGAGGAGGGTTTACGATGCATTGGGAGGGGATGAGAAGCGAATATTTCTTGACATAGCCTGCTTTTTTACAAGGAATTACTCGAGGTTGAGTTT GATTAAGATGATGCAGTGTAGCTATAGCGCAGCGTATAGTCTTGTGGAGGATTTGATTGATAAAACCATATTGGAATGTGATCAATGTACGGATCAGGAT CATGACCATGCTGATGGTGAAGGTGAAAGCATTCAGGTTCATGATTTATTACACTATATGGCTTGGAACATCGTCAATGAGGAACCAGAAGTTAGGAACC GTAGTCGGCTCGAGAATCCCGATGATATCCGCAAATTACTAACCACTATAAAGGGAGAGAGGGCAACTGAAGGCCTGAACTTGGACCTGTCCAAAGCAGA GGAGATGCATTTGGGGGCTGACGTGTTTGTGGGGATGGATCGTCTTCGTTTTCTGATATTCACATTCCTAAATTCATCATCATCAGATGAGGCAATGACT TGCAAAATCCATCTCCCAAATTCAGGCTTGGACTTACTTCCTCCAGAGTTGAGAATTTTATGGTGGGACGGCTTTCCTTCTCCATATTTTCCATCAAAAT TCTCTTCTCACAATCTTGTCCGAATTCGGATTCGTCATAGCCCTCTCACAAAATGTTGGGATGGAGTTCAGGACTTTGTGAACCTGAGGTGGTGCGACCT ATCCTACTGCACAAAACTCATCAGCGTCCCTGATTTATCCAAGGCCATACATCTCGAAACACTCCAGCTTACGGGATGCGCAAGTATAGTAGAACTGCCT TCCTTTGTGGAATTCCTTGACAAGTTGATCTTATTAGATATTGGAGAATGCGAGAATTTGGAGATCCTTCCACCGAAATTCGGCTCCAAACATCTCAAAC ATGTCAGAATCACCAACTGTCGGAAAATAAAAGAATGCCCTGAGATGGTAAGTGACTGGGACACCCTGGACTTGCATGGTACAGCCATCAAAACTTTTCC ATCGCCAATGTACAATATCAAAAAAGCTCAAATGTTGAGTCTCCATGGGAAAAACATCACCAGTTTCCCAGATTTCTCTCCAACTCTAAAGAGATTCAGA CTGTGCCACACTGCGATAAAAGTCGTTTCACCTCAACGATTGAGAAATTCTCGCAAGTATAATCTCCCGAGAATCGCTAGGCTAGAGCTGTTGGGAAATA CAAAGCTCGTGACCTTTACAAGGACTATTTGGAAAATAGTCACAAAAGAGCTTATTATCCTTGGTTCCCCAATGCTGGAAACGCTACCAGAAATTCAGGA TTGCACGAGTGCTAGACACCTCAGGATGTTGGTGCTGGAAGAATGCGAGAGATTCGAGTGCGTTCCATCTAACATCAACATCCTCAAGTCCTTGGAGGTA CTAGCTATAATTGGTGCAGCTATCAGGGTGTTGCCTTCATCTATACATGAACTGGAGCAGCTACGTACCTTAGATTTGTCACATTGCAAGAGTTTAGAAT CTCTTCCATCCACGATTAGTAAGCTTGGTAAATTGTCCCAACTTTACTTGGTGGGTTGCGAGAGCATTTATCTTCTTCCAGAACTTCCACAGAATCTGAA AATGTTGGTTGCCAGCAATTGCAAATCATTACAAGTTGTTTCCAGCAACAACTTTAGGAAGCTAAATTTCCGCCACATAAGCTTTGTGGGTTGCCAACAG ATGGATGGAAAGTTGCTTGGCCGATTGATGGCCAAGTTACCTCTTCATGATACAATGTCCCTCCGATCTTTGTATGGTGGTAATGGTGAGAAACACCCAA AAACTGTGGTGTATCCAGGAGGTGAACTTCCAGGATGGTTTGCTTACAAAAGTACTGGAAATTCTGTAACAGTTCCTTTGCCTAGAAATGCAAAACAATT GAAGGGAATAACATTTGCCGTCGTGTATGCCCTAGAAGTTTCACAATTTGGTGATCCAGATATTCATCTCCACATGAAATGTGAGTGCTTCCTCAAATCT CCAGGTGGTGGCCAAGGATGCATAAGCGATTATGATAATGGTGGGTCAAGTGATACCGTCATGGAGACATGGATTGTATGTATGAGCAGCTTCCATGACT GTGCATCTGCAGATCATGTTTTTTTGTGGCTGGACCACAGAGCTGAGCCCAAGCTAGCGGGTGAAAAAGATTTTGAAGATGAAGTTGCTTGGTATCTAAA ATATTCTGGTTTGGATGTTTCATTTAGGTTCTCCATTGAAGTAAAACGTGGAGATATAATGCACTGCAAAATCAAGCATTCTGGCGTCTCCCTTGCATTT CAGACTTCTGCTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10015350 pacid=23160919 polypeptide=Lus10015350 locus=Lus10015350.g ID=Lus10015350.BGIv1.0 annot-version=v1.0 MDSTSCSSSRRSGSVPWEYDVFLCFRGETRCSFTSHVMAALSEMKIKTFIDTMLRKGDSIAELHSVLKRSAVSVIIFSERFADSPWCLDEVATISRGVQE FGHRVLPIFYNVHPSEVGDDAGCYADMINKHDRSPPVKIKWRTALKDIVDKAGLTSNQIRLESELIKAIVENVLKELNEMSPSVEQKNLIGMDSRVWEVE RLLDINRSDEIRVVGLWGMPGIGKTRLAKVLYQRFTNFSRRDSDDGEGYNKHYFVQNIKGRQDNIEGIQKELYSTLLSEQDQNITCGDLETSYRRARLSR LKVFIVLDDVHTILLLEQLLLGDVLNLTKLFALGSRIIVTTTNKRVLDYAMAKIYHVEKLNTQDSLRLFSSCSFKRENPYAEMRNLSITAVEYCKGNPLA LRLLGRMLSGKKKSYWESFLERLRKNPEPLEIHDLLRRVYDALGGDEKRIFLDIACFFTRNYSRLSLIKMMQCSYSAAYSLVEDLIDKTILECDQCTDQD HDHADGEGESIQVHDLLHYMAWNIVNEEPEVRNRSRLENPDDIRKLLTTIKGERATEGLNLDLSKAEEMHLGADVFVGMDRLRFLIFTFLNSSSSDEAMT CKIHLPNSGLDLLPPELRILWWDGFPSPYFPSKFSSHNLVRIRIRHSPLTKCWDGVQDFVNLRWCDLSYCTKLISVPDLSKAIHLETLQLTGCASIVELP SFVEFLDKLILLDIGECENLEILPPKFGSKHLKHVRITNCRKIKECPEMVSDWDTLDLHGTAIKTFPSPMYNIKKAQMLSLHGKNITSFPDFSPTLKRFR LCHTAIKVVSPQRLRNSRKYNLPRIARLELLGNTKLVTFTRTIWKIVTKELIILGSPMLETLPEIQDCTSARHLRMLVLEECERFECVPSNINILKSLEV LAIIGAAIRVLPSSIHELEQLRTLDLSHCKSLESLPSTISKLGKLSQLYLVGCESIYLLPELPQNLKMLVASNCKSLQVVSSNNFRKLNFRHISFVGCQQ MDGKLLGRLMAKLPLHDTMSLRSLYGGNGEKHPKTVVYPGGELPGWFAYKSTGNSVTVPLPRNAKQLKGITFAVVYALEVSQFGDPDIHLHMKCECFLKS PGGGQGCISDYDNGGSSDTVMETWIVCMSSFHDCASADHVFLWLDHRAEPKLAGEKDFEDEVAWYLKYSGLDVSFRFSIEVKRGDIMHCKIKHSGVSLAF QTSAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	0	1
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	1.4	0.8384
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	3.2	0.8269
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	3.5	0.8221
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	4.5	0.8106
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	8.9	0.7901
AT2G36430			Plant protein of unknown funct...		Lus10027719 [exp]	9.6	0.8254
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	9.9	0.7773
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	10.1	0.8100
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	10.8	0.7957
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	13.0	0.8042

Compare expression of checked genes

Lus10015350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.