Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 575 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 555 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 533 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 517 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 464 / 1e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 461 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 459 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 429 / 6e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 409 / 1e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 353 / 1e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015349 [exp] 620 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 613 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 569 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 552 / 0 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 546 / 0 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 521 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 509 / 1e-177 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 484 / 4e-168 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 436 / 6e-149 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 654 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 598 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 598 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 595 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 558 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 558 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 556 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 548 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 546 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 463 / 3e-162 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015354 pacid=23160849 polypeptide=Lus10015354 locus=Lus10015354.g ID=Lus10015354.BGIv1.0 annot-version=v1.0 ATGATGGAGGCTTGGACGACGCTTGGGTCTGCAATCGGCGGCCTAATGTTCAGTTGGGCAATGTTCCAGCAGTACTTCCCCTACCAGCTCCGTGGCTTCC TCGACCGCTACACCCGAAAACTCACCTCCTTCTTCTACCCATACATCCAAATCACCTTCCCTGAGTACACCGGCGACCGCTTCAAACGCAGCCAAGCCTT CTCCACCATCCAACACTACCTCACCGCTCATTCCTCTGCCTCTGCCAAGCGCCTCAAGGCTGACTTCGTCGGCGACGGCCACCACTCGGTCCTCCTCTCC ATGGATGACCAAGAGGAAGTCTCCGACGTCTTCCGCGGTGTCAAGGTCTGGTGGGCTTCCCGCAATGTATCCCCCAAAACCCAGTCCTTGTCCTTCTACC CTGCCGCCGACGAACGCCGTTACTTCACCCTCACCGTCCATAAGCGCCACCGTGACGTAATCACCACCGACTACATAGCCCACGTCTTGGACGAAGGAAA GGCGATTGCGTCCAGGAACAGACAGAAGAAGCTGTACACCAACAATCCCAGCCAGAATTGGTCCGGATGGAAGGCTAGCAAGTGGAGCCATGTCCAGTTC GAGCACCCCGCGAATTTCGATACTCTGGGGATGGCCGTCAAGGCCAAGGAACGGATCAAGAAGGATCTCCTCAAGTTCAGCCAAGGGAAACACTACTACA ACAAGATCGGCAAGCCCTGGAAGCGAGGGTATCTCCTGTATGGCCCTCCTGGAACCGGGAAATCGACAATGATTGCGGCCATGGCGAATTTCTTGAACTA CGACATTTACGATTTGGAGTTGACGACGGTGAAGGACAACTCTGAGCTGAGGAAGTTATTGATTGAGACGACGGGGAAGTCAATTATTGTGATTGAAGAT ATTGACTGCTCGCTTGATCTCACCGGTCAGAGGAAGGGCAAGAAAGGAACTAAAAACGACGACGGCGATGAAGAAACATCAGAGAAAGCAGAGGATCCTG TTTCTAAAGCCAAAAAGGAAGATGAGAAAGAGAGCAAGAGCGACAGCAAGGTGACACTGTCGGGCCTGCTGAATTTCATAGACGGGATATGGTCGGCCTG CGGCGGAGAGAGGATCATAGTTTTCACAACGAATTACGTGGATAAGCTGGATCCGGCATTGATAAGGAGAGGGAGGATGGACATGCACATTGAGATGTCC TACTGTTGCTTCGAAGCTTTGAAGTTGCTGGTCAGGAATTACCTGGATGTAGAGGAGCATGAGCTGTTTGCAAGGATTGAGGAGCTGATTGGGGAAACCA AGATGACACCTGCTGATGTTGCTGAGAATTTGATGCCCAAATCGGATGAAGAAGATGAGGACGTGTGTTTGAGGAACTTGGTTGAAGCACTTGAAGCTGC AAAGGAAGATGAAGCTAAGGAGGAGAAGGCGAAAGAAGAAGCAAAGCGAAAGGAGGAGGAGAAGAAACCAGCAGATAAAGTTAATGCAGAAGAAGAAGTA GAAGGATGA
AA sequence Show only first row Show all	>Lus10015354 pacid=23160849 polypeptide=Lus10015354 locus=Lus10015354.g ID=Lus10015354.BGIv1.0 annot-version=v1.0 MMEAWTTLGSAIGGLMFSWAMFQQYFPYQLRGFLDRYTRKLTSFFYPYIQITFPEYTGDRFKRSQAFSTIQHYLTAHSSASAKRLKADFVGDGHHSVLLS MDDQEEVSDVFRGVKVWWASRNVSPKTQSLSFYPAADERRYFTLTVHKRHRDVITTDYIAHVLDEGKAIASRNRQKKLYTNNPSQNWSGWKASKWSHVQF EHPANFDTLGMAVKAKERIKKDLLKFSQGKHYYNKIGKPWKRGYLLYGPPGTGKSTMIAAMANFLNYDIYDLELTTVKDNSELRKLLIETTGKSIIVIED IDCSLDLTGQRKGKKGTKNDDGDEETSEKAEDPVSKAKKEDEKESKSDSKVTLSGLLNFIDGIWSACGGERIIVFTTNYVDKLDPALIRRGRMDMHIEMS YCCFEALKLLVRNYLDVEEHELFARIEELIGETKMTPADVAENLMPKSDEEDEDVCLRNLVEALEAAKEDEAKEEKAKEEAKRKEEEKKPADKVNAEEEV EG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	0	1
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	1.0	0.9345
					Lus10042751 [exp]	2.0	0.9218
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	2.4	0.9210
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	2.8	0.9177
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	3.2	0.9173
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10024505 [exp]	4.0	0.8882
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	4.2	0.8664
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	4.6	0.8950
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	4.7	0.8774
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	6.9	0.9019

Compare expression of checked genes

Lus10015354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.