Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28910 281 / 8e-94 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT3G47600 268 / 1e-88 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT5G62470 262 / 6e-86 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G74650 259 / 6e-85 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G08810 241 / 8e-79 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 197 / 7e-61 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G02940 190 / 3e-58 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 190 / 6e-58 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G01140 189 / 3e-57 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G28110 186 / 4e-57 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030677 [exp] 279 / 4e-93 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10002056 [exp] 265 / 5e-87 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10005245 [exp] 254 / 2e-83 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10042200 [exp] 251 / 5e-81 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10024218 [exp] 248 / 7e-81 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10008616 [exp] 246 / 8e-79 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10009522 [exp] 242 / 1e-78 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 239 / 2e-77 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10033003 [exp] 197 / 5e-60 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082500 [exp] 281 / 1e-93 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.004G126700 [exp] 277 / 8e-92 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.013G067500 [exp] 244 / 2e-79 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 241 / 8e-78 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G086300 [exp] 199 / 8e-61 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.019G118200 [exp] 193 / 7e-59 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 191 / 6e-58 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 191 / 6e-58 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.010G165700 [exp] 189 / 2e-57 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.012G140700 [exp] 187 / 2e-57 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015369 pacid=23160880 polypeptide=Lus10015369 locus=Lus10015369.g ID=Lus10015369.BGIv1.0 annot-version=v1.0 ATGGGGAGACCACCATGCTGTGACAAGCTCGGTGTGAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCCAACTGGTTTCCTATATCCAGGAGCATGGCC CTGGAAATTGGAGAGCCGTCCCCACCAATACAGGGCTGCTTAGATGCAGCAAGAGTTGCCGGCTAAGATGGACTAATTACCTCCGTCCAGGGATCAAACG TGGCAATTTCACTGATCATGAAGAACAGATGATCATCCACCTTCAAGCCCTTCTCGGGAACAGATGGGCAGCCATAGCATCGTATCTACCGGAGAGAACA GACAACGACATTAAGAATTACTGGAACACTCACCTGAGGAGGAAGCTATCAATGGTGGATCAGCCACCACAGAGGATTAATGGTGACTACAATTCCTCGT CCTCCGTCAATCTCTCGCCGTCTTGCTCATCGTCAACAACCAAAGCACTAGCAGCAGTGCCTAAGAGATCTAAGAAATCAACAACAGTACCCTCCTCTAG AGGCCAGTGGGAAAGAAGACTCCAGACAGATATCCATAACGCCCGACGTGCTCTCTCCCAGGCAATATCTCCTCCGACCAAAGCCGAAACAGTACCATCC CCAGAAGTCGACGTCTCTGGATCTGGATCTGTATCCTGCTCTTCGGCGGCGGTTTACGCGTCTAATGCCGAGAATATCGCCAGGTTACTCAAAGGCTGGG GAAGAAAGCAGCAGCAGCAGCAACCCTCAAATGCGAATTTGAAGAACGAGCCCGCGGAGGAGTCAATGTGGAGTGAGCCCTCTCAGGTTAGTAGCAGTGC CTATTCGGTGGTTGACTTGCCTGACCACCACGCAATGGACTCTTTTCTCGGGTCAGACCTCTACTCTCCGACCTTGACGACGCCTTTTGAGGGACAGACT GTTGTTGCTTCCGACGACGAGGTCCGTCTGTCGTTGATCGAGAAATGGTTAATTCATGTTATTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10015369 pacid=23160880 polypeptide=Lus10015369 locus=Lus10015369.g ID=Lus10015369.BGIv1.0 annot-version=v1.0 MGRPPCCDKLGVKKGPWTPEEDIQLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEQMIIHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLRRKLSMVDQPPQRINGDYNSSSSVNLSPSCSSSTTKALAAVPKRSKKSTTVPSSRGQWERRLQTDIHNARRALSQAISPPTKAETVPS PEVDVSGSGSVSCSSAAVYASNAENIARLLKGWGRKQQQQQPSNANLKNEPAEESMWSEPSQVSSSAYSVVDLPDHHAMDSFLGSDLYSPTLTTPFEGQT VVASDDEVRLSLIEKWLIHVIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	0	1
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	4.0	0.9165
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	9.9	0.9017
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	11.6	0.9070
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10025246 [exp]	13.5	0.8718
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	13.8	0.9272
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	15.0	0.9016
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	19.8	0.9266
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	23.1	0.8281
					Lus10036535 [exp]	23.5	0.9191
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	30.5	0.9139

Compare expression of checked genes

Lus10015369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.