Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 99 / 4e-25 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28370 95 / 4e-24 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT3G15210 92 / 3e-22 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 87 / 5e-21 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G50640 82 / 7e-19 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 82 / 1e-18 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G03800 82 / 1e-18 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G53170 81 / 1e-18 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G12980 82 / 6e-18 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G61890 77 / 1e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039857 [exp] 86 / 3e-20 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 84 / 1e-19 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10035076 [exp] 82 / 3e-18 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035329 [exp] 82 / 4e-18 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 77 / 1e-17 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 79 / 2e-17 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10018623 [exp] 75 / 2e-16 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10022426 [exp] 77 / 4e-16 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10035129 [exp] 75 / 9e-16 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047600 [exp] 132 / 9e-38 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G057000 [exp] 124 / 2e-34 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 101 / 7e-26 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.017G013700 [exp] 100 / 2e-25 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 92 / 1e-22 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G115600 [exp] 92 / 2e-22 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.011G056900 [exp] 86 / 2e-20 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 86 / 2e-20 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.001G356100 [exp] 81 / 2e-18 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.005G219600 [exp] 79 / 7e-18 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10015415 pacid=23160908 polypeptide=Lus10015415 locus=Lus10015415.g ID=Lus10015415.BGIv1.0 annot-version=v1.0 ATGGCTCCCAGGGAGAAGATCTCCGCCGCGAAACCAAACAACGGCGGCGGTGGATCAGAGGTTCACTTTCGGGGAGTGAGGAAGAGGCCTTGGGGACGGT ACGCCGCCGAGATCAGGGATCCGGGGAAGAAGAGCCGCGTCTGGCTTGGGACGTTCGATACCGCGGAGGAAGCCGCCCGTGCCTACGACGCCGCGGCCCG CGAATTCCGCGGCGCCAAGGCCAAGACCAATTTCCCTCACTCCGGCGAGCTGCAGATGACGATGATGATGAATAAGAATATTAATAATAACATTCTGATG AACAAGAAGGCTTTCAATAGCCAGATCTCCGTCTCCGCCGCCGCCAATAACAATCGCAGCCCTAGCCAGAGCAGCACGGTGGAGTCCTCCAGCCGCGAGC CGCAACAGCAGATGATAATCGAGTCCTCTCCGCCTCTGGATCTGAATCTCGGACCTGTCTCCGCCATCGTCCGCTTTCCGTTTCAGCCGATGAGCCGCAT CCACAATCCGCATCACCACGTCACCTACTACGAGGCGATGATGAAGAACGCGCAGTATCAACGGATGATTCTCGATCATCATCAACGCAACCAGGCTATT TTCAGCGGCGGCGGAGGAGTCCAGAGCGATTCCGATTCTTCCTCCGTCATCGATTTGAACCATAACCACACCGATCCAATCCATCCGTCGCCGAAAACAA TGAGATCTCTGGATCTGGATCTGAACCTGCCGCCACCATCGGAGAACGTGTGA
AA sequence Show only first row Show all	>Lus10015415 pacid=23160908 polypeptide=Lus10015415 locus=Lus10015415.g ID=Lus10015415.BGIv1.0 annot-version=v1.0 MAPREKISAAKPNNGGGGSEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPHSGELQMTMMMNKNINNNILM NKKAFNSQISVSAAANNNRSPSQSSTVESSSREPQQQMIIESSPPLDLNLGPVSAIVRFPFQPMSRIHNPHHHVTYYEAMMKNAQYQRMILDHHQRNQAI FSGGGGVQSDSDSSSVIDLNHNHTDPIHPSPKTMRSLDLDLNLPPPSENV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10015415 [exp]	0	1
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	3.5	0.9245
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	5.8	0.9066
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	8.7	0.9060
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	10.2	0.8948
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	10.4	0.8954
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	11.7	0.9052
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	14.0	0.8726
AT4G29780			unknown protein		Lus10011946 [exp]	14.0	0.8967
AT4G29780			unknown protein		Lus10027622 [exp]	18.5	0.8923
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	19.5	0.8815

Compare expression of checked genes

Lus10015415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.