Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 281 / 7e-84 transmembrane receptors;ATP binding (.1.2) AT1G27180 280 / 3e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G64070 268 / 3e-80 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 264 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 264 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 265 / 4e-78 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G56540 264 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 261 / 1e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G56510 261 / 1e-77 ADR2, WRR4 WHITE RUST RESISTANCE 4, ACTIVATED DISEASE RESISTANCE 2, Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 261 / 6e-77 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032101 [exp] 743 / 0 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10014582 [exp] 473 / 3e-167 AT1G27170 186 / 9e-56 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 500 / 8e-164 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 488 / 2e-161 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 482 / 1e-157 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 473 / 1e-154 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 461 / 3e-149 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 455 / 4e-149 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018309 [exp] 427 / 3e-147 AT1G27180 245 / 1e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002428 [exp] 358 / 1e-118 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 367 / 8e-118 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 370 / 4e-117 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 369 / 1e-116 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 350 / 6e-116 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 350 / 7e-116 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 366 / 2e-115 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 349 / 3e-114 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 358 / 4e-114 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 360 / 7e-114 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10015453 pacid=23173584 polypeptide=Lus10015453 locus=Lus10015453.g ID=Lus10015453.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGATAGTAATATCGTGGTGGATTTGGCCTTTCTCGGCACTCGCATTCATTCTCCCCTTAATATTTCTCTTCTCCAAAAATTTATCTACCT CAGCTTGGACTCCCAGAGAACCACAACCAGTAGAAGAAACTTCATTACAATCCTCTGATAAATCCCCATCTAGTTCTTCAGATCTCCCAGTAGGCGAATA CGAAGTGTTCCTAAGCTTCCGGGGTCCAGACACTCGCCTTACCTTTACCGATTTCCTCTACACCTACCTCGTCCAGGCCAAAATCCGCACTTTCAGGGAC GACGACGACCTCCGGAAAGGTCACACCATCGGCCCTGAGCTCGTCAAGGCCATTCATGAATCCAAGATCGGGATCCCCATCTTCTCCCCTAACTACGCCT CCAGCAAATGGTGCCTTCAAGAACTTGCTGAAATGGTTGACTGCAAGAGAAACAAAGGCCAGGTCATTCTTCCAGTCTTCTACTACGTTGACCCCACCGA CGTCCGTCATCAGACCGGGACATACAAACACGCATTTGAACAGCACGATAAGAAGTTCAAGAAGGAGACTGTAGATAAATGGAGGTCTGCTTTGGCTGAG GTTGGAGCTTTGAAAGGATGGGTTGTCAAGGATTACAATGGGCAAGGAGCTACAATAGAGAAAGTTTTCTCAGATGTATGGTCGACGCTGAGGAGGGAGT ACTTGTTAGTGACTGATGCTTTGGTAGGCATTGAGCATCATGTAGAAGAAATGATGAAACTTCTGGATCCAGACTCCATTAATGAGGTGAAGATTGTTGG ACTTCATGGTGTAGCTGGGATCGGCAAGACTACTATAGCCAAGGCTGTCTATAACAAGCTCTTTCACCGGTTCGACCATTGTTGCTTTCTTGAAGATGTA CGCGAAACGTTACAAGAACACGGGGGAATCATCAAGTTGCAAAATAAGCTCGTCTCTGGCATTCTGAAGATGGATTCGGACATCGAGAATTACAGTCAAG GAATCTACTTGATAAAGAACAGAGTTTGCAAGCAAAAAGTTCTGATAGTTCTTGATTATGTGGATAGGAAATTTGAATTTGATAAGGTGATAGGACACAG AGACTGGTTTTCCCCCGGTAGCAGGATCATTATCACAACAAGAGACAGAAAGGTTCTCAATATTCTTAAAGTACGCGAGATGTATGAACCCTCAGTAATG AGTGAAGAACATTCTCTTCAACTTTTCAGCAAGCATGCGTTTGGCATGGATTCTCCTCCAGAAGACTATGCAGAACTATCCGCGGATATTGTATCAGCTG TGGGAGGGATTCCTTTAGCCCTTAAGGATGTGGGGTCTGGTTTATTTGGAGAAGATATAGAAGTGTGGGAAGAAACATTGATGAAGTTGAGAGATAAACA CATATATAGAGACAATCGGTGA
AA sequence Show only first row Show all	>Lus10015453 pacid=23173584 polypeptide=Lus10015453 locus=Lus10015453.g ID=Lus10015453.BGIv1.0 annot-version=v1.0 MEQQIVISWWIWPFSALAFILPLIFLFSKNLSTSAWTPREPQPVEETSLQSSDKSPSSSSDLPVGEYEVFLSFRGPDTRLTFTDFLYTYLVQAKIRTFRD DDDLRKGHTIGPELVKAIHESKIGIPIFSPNYASSKWCLQELAEMVDCKRNKGQVILPVFYYVDPTDVRHQTGTYKHAFEQHDKKFKKETVDKWRSALAE VGALKGWVVKDYNGQGATIEKVFSDVWSTLRREYLLVTDALVGIEHHVEEMMKLLDPDSINEVKIVGLHGVAGIGKTTIAKAVYNKLFHRFDHCCFLEDV RETLQEHGGIIKLQNKLVSGILKMDSDIENYSQGIYLIKNRVCKQKVLIVLDYVDRKFEFDKVIGHRDWFSPGSRIIITTRDRKVLNILKVREMYEPSVM SEEHSLQLFSKHAFGMDSPPEDYAELSADIVSAVGGIPLALKDVGSGLFGEDIEVWEETLMKLRDKHIYRDNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	3.6	0.8073
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	9.8	0.7628
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	14.1	0.7722
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	15.3	0.7893
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	18.1	0.7680
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	18.8	0.7375
AT5G65880			unknown protein		Lus10011719 [exp]	20.4	0.7976
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	20.9	0.7296
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	23.5	0.7362
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	30.0	0.7472

Compare expression of checked genes

Lus10015453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.