Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 632 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 629 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 371 / 9e-128 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G19990 330 / 2e-111 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 329 / 6e-111 RPT6A AAA-type ATPase family protein (.1) AT3G05530 325 / 2e-109 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 325 / 2e-109 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT1G53750 312 / 4e-104 RPT1A regulatory particle triple-A 1A (.1) AT1G45000 310 / 5e-104 AAA-type ATPase family protein (.1.2) AT5G43010 309 / 2e-103 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019995 [exp] 646 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 636 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 634 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10001313 [exp] 583 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10022834 [exp] 520 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 333 / 1e-112 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10029887 [exp] 327 / 6e-110 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 326 / 1e-109 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10006854 [exp] 320 / 1e-108 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 635 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 630 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 369 / 6e-127 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 366 / 9e-126 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G098300 [exp] 333 / 2e-112 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 331 / 9e-112 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G025100 [exp] 327 / 5e-110 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 326 / 7e-110 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.001G161700 [exp] 314 / 6e-105 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 312 / 3e-104 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015524 pacid=23173580 polypeptide=Lus10015524 locus=Lus10015524.g ID=Lus10015524.BGIv1.0 annot-version=v1.0 ATGAGCGTCGGGAATCTCGAGGAGCTTATCGATGAAAATCACGCCATCGTTTCGTCATCTGTTGGTCCTGAGTACTACGTAGGGATCCTCTCGTTCGTTG ATAAGGACCAGATCGAGCCTGGATGCGCAATCCTAATGCATAATAAGGTGCTTTCTGTAGTTGGGCTTCTTCAAGATGATGTTGATCCCATGGTTTCAGT GATGAAAGTTGAGAAAGCCCCGCTACAGTCGTATGCGGACATTGGTGGGTTGGATGCTCAAATACAGGAGATAAAGGAAGCAGTTGAGCTTCCTCTTACT CATCCTGAACTGTATGAAGACATCGGGATTAGACCTCCTAAAGGAGTTATCCTCTATGGAGAGCCAGGAACTGGGAAAACATTGCTTGCAAAGGCTGTTG CGAATTCTACTTCCGCAACTTTCTTGCGTGTAGTAGGAAGTGAACTGATTCAGAAGTATCTAGGTGATGGTCCAAAACTGGTCAGGGAGTTGTTTAGAGT AGCAGATGACCTTTCACCATCGATTGTATTTATCGACGAAATCGATGCAGTTGGCACAAAGAGGTATGATGCAAATTCTGGTGGTGAGCGCGAGATCCAG AGGACTATGTTGGAATTGCTGAACCAGTTGGATGGGTTTGATTCAAGGGGAGACGTGAAAGTGATTCTTGCAACCAACAGGATCGAAAGTCTTGATCCTG CCCTGTTACGTCCAGGACGAATTGATAGGAAGATAGAATTCCCACTTCCAGATATCAAAACCAGAAGGCGCATCTTCCAGATACACACGTCAAGGATGAC ATTAGCAGATGACGTTAACTTGGAAGAGTTTGTGATGACCAAGGACGAGTTTTCAGGGGCTGACATCAAAGCGATCTGCACAGAGGCAGGTTTGCTTGCT TTAAGAGAGAGGCGTATGAAGGTAACGCATGGGGATTTCAAGAAAGCAAAGGAGAAGGTGATGTTCAAGAAGAAAGAAGGGGTGCCGGAAGGACTGTACA TGTAA
AA sequence Show only first row Show all	>Lus10015524 pacid=23173580 polypeptide=Lus10015524 locus=Lus10015524.g ID=Lus10015524.BGIv1.0 annot-version=v1.0 MSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLQSYADIGGLDAQIQEIKEAVELPLT HPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQ RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA LRERRMKVTHGDFKKAKEKVMFKKKEGVPEGLYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	0	1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	1.4	0.9433
AT1G32310			unknown protein		Lus10030955 [exp]	1.4	0.9421
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	1.7	0.9397
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10012777 [exp]	3.2	0.9300
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	3.9	0.9153
AT3G52220			unknown protein		Lus10039101 [exp]	5.3	0.9321
AT2G32760			unknown protein		Lus10016662 [exp]	6.5	0.9293
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	7.6	0.9052
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10012273 [exp]	7.9	0.9198
AT2G31800			Integrin-linked protein kinase...		Lus10027107 [exp]	9.2	0.9175

Compare expression of checked genes

Lus10015524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.