Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 624 / 0 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G57100 512 / 6e-177 Nucleotide/sugar transporter family protein (.1) AT5G55950 469 / 3e-160 Nucleotide/sugar transporter family protein (.1) AT5G58950 308 / 6e-96 Protein kinase superfamily protein (.1) AT4G31170 296 / 4e-93 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 277 / 1e-85 Protein kinase superfamily protein (.1) AT3G46930 249 / 3e-74 Protein kinase superfamily protein (.1) AT4G38470 249 / 2e-73 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 239 / 2e-72 Protein kinase superfamily protein (.1) AT4G35780 242 / 7e-71 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020017 [exp] 767 / 0 AT5G57100 507 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10020018 [exp] 763 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10016648 [exp] 461 / 4e-157 AT5G55950 603 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10022563 [exp] 457 / 1e-155 AT5G55950 598 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10042122 [exp] 396 / 7e-132 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 325 / 3e-103 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 325 / 4e-103 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 320 / 4e-101 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10000237 [exp] 300 / 1e-96 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022800 [exp] 677 / 0 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 659 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.006G072500 [exp] 613 / 0 AT5G57100 499 / 2e-177 Nucleotide/sugar transporter family protein (.1) Potri.018G139500 [exp] 595 / 0 AT5G57100 504 / 1e-179 Nucleotide/sugar transporter family protein (.1) Potri.001G370800 [exp] 442 / 9e-150 AT5G55950 541 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.012G080000 [exp] 395 / 6e-132 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 394 / 1e-131 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 341 / 8e-109 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 333 / 6e-106 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 303 / 1e-95 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10015541 pacid=23173663 polypeptide=Lus10015541 locus=Lus10015541.g ID=Lus10015541.BGIv1.0 annot-version=v1.0 ATGGCTGGTTCTTGTTTCCCTGCTTTGCGCCTGGGAAAACCCAAGGGCAAAAGATTGGCAATGCCTTCCACATCAAGAAGAGATCATAATCATATGAATT CAGACACTGAAAACATGGAGCGGAAGAGGTTTGACAGTTTGGAATCGTGGTCGATGATATTGGAGTCGGAGAACGTGGAGACATGGGAGGCTTCTAAGGA AGATCAAGAGGAGTGGACGGCCGACCTTTCCCAGTTGTTCATAGGGAACAAGTTTGCATCTGGGGCTCACAGTAGGATATACCGCGGAATCTACAAGCAG AGAGCAGTTGCTGTTAAAATGGTGAGGATCCCTAACCAGAAGGAGGAGACTCGATCTCTCCTTGAGCAGCAGTTCAAATCTGAAGTTGCTTTGCTATCCA GGCTCTACCATCCCAATATAGTGCAGTTCATAGCTGCTTGCAAAAAGCCACCAGTCTACTGCATTATCACAGAGTACATGTCACAAGGAACTCTGAGGAT GTACCTAAACAAGAAAGAGCCTTACTCGCTTTCTACCGAGACCGTTCTGAGGCTGGCTCTTGATATATCACGAGGGATGGAGTATCTTCACTCCCAAGGC GTAATCCACAGAGACCTGAAGTCGAACAATCTACTTCTTAATGATGAAATGCGGGTCAAAGTGGCGGATTTCGGTACATCCTGCCTCGAGACACAGTGCC AGGAGACGAAAGGAAATAAGGGGACTTACCGTTGGATGGCACCGGAGATGATCAAGGAAAAGCCTTACACTCGAAAAGTCGATGTTTATAGTTTCGGTAT TGTATTGTGGGAGCTCACAACAGCTTTGCTTCCGTTCCAAGGAATGACTCCTGTCCAGGCCGCTTTTGCAGTGGCTGAGAAGAAGGAACGGCCTCCGCTG CCAGCGAGTTGTCAGCCTGCACTTGCGCACTTGATCAAGTGTTGTTGGGCCGCAAATCCGTCAAAACGGCCAGATTTCAGTGACATTGTCTGTGCTTTGG AGAAGTACGATGAATGCGTGAAAGAAGGGCTTCCTCTGACTTCACATGCCACACTAGTTAGCGGAAGTCTCATTCTTGAACGATTCAAGGCTTGTGTATC TAGAGATAGCTTAGAGATGTTGAGTAGCCGTGAGTTTCTCAATTTCTTTGCAAGGAAAGATGCCAGGAAGATACTCAAGCGCAAGGACAGTGACGCCGGT GAACCAGGAAGGGCTTTGGAAGAACTGAGATCCTCTTTGTTTAACAAATTCCGCTCACCGGAGAATGCGAAGCGACATGACCAGCGCCACTGTGGTCCAG TTGCTGCTCTTACATTCAACTTCATCATAGCGGTTGGCATTATCTTCATTAACAAATGGGTGTTTCAAGGAGCCGGTTTCCGGTATCCTATCTGCCTGAG TTTTATCCACTACGCAATAAGCTGGATTTTGATGGCCATTTTAAAAGCCATGTCCATTCTCCCTGCAGCACCTCCATCTAAAGCAAATCGCTTGACTTTG TTTACTCTTGGTTTTGTCATGTCGCTCTCTACTGGCCTGGCTAATGTCAGCTTGAAGTATAATAGTGTGGGTTTCTACCAGATGGCTAAGATTGCTGTTA CTCCTTCTATTGTTTTCGCTCAATTCATATGGTTTAAAAAGACTGTTTCTTTTTCCAAGGTGGTTGCACTTACAGTTGCCTCTACTGGAGTTGCGCTCGC TACAGTAACTGACTTGCAGTTTAGTCTCTTTGGTGCATGCGTAGCACTGGCCTGGATAATCCCTAGTGCAGTGAACAAGATCATGTGGTCAACAATGCAA CAGCGAGACAACTGGACAGCCTTAGCGTTGATGTGGAAGACTACACCCATCACTTTGATCTTCCTTGCTGCTTTGATTCCCTTCTTTGATCCCGCTGGTG TATTCTCCTATGATTGGAACTTGAGTAACACGACGTTGATAATCACCTCTGCACTCTTTGGATTTTTGCTTCAGTGGTCCGGTGCCTTGGCTCTCGGGGC GACATCTGCAATATCTCATGTTGTTCTTGGTCAATTTAAGACCTGCGTTGTGCTGCTGGGGAACTACTACATTTTCGGGGCGAATCCAGGAGTGACGAGC ATCTTTGGTGCACTCATAGCGATCGGCGGGATGTCTGGTTTCACGTATCTTAATCTACTACAAAATGCCAAATCCCAAACAGCACCACAGAAGTCACCGG GGAAGGACAAATCCAGGTTGAACAAAGAGAACGGTGGCAACACCAGTGATGGATATGGCGAGGAATCTGTGTAA
AA sequence Show only first row Show all	>Lus10015541 pacid=23173663 polypeptide=Lus10015541 locus=Lus10015541.g ID=Lus10015541.BGIv1.0 annot-version=v1.0 MAGSCFPALRLGKPKGKRLAMPSTSRRDHNHMNSDTENMERKRFDSLESWSMILESENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQ RAVAVKMVRIPNQKEETRSLLEQQFKSEVALLSRLYHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETVLRLALDISRGMEYLHSQG VIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCQETKGNKGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKKERPPL PASCQPALAHLIKCCWAANPSKRPDFSDIVCALEKYDECVKEGLPLTSHATLVSGSLILERFKACVSRDSLEMLSSREFLNFFARKDARKILKRKDSDAG EPGRALEELRSSLFNKFRSPENAKRHDQRHCGPVAALTFNFIIAVGIIFINKWVFQGAGFRYPICLSFIHYAISWILMAILKAMSILPAAPPSKANRLTL FTLGFVMSLSTGLANVSLKYNSVGFYQMAKIAVTPSIVFAQFIWFKKTVSFSKVVALTVASTGVALATVTDLQFSLFGACVALAWIIPSAVNKIMWSTMQ QRDNWTALALMWKTTPITLIFLAALIPFFDPAGVFSYDWNLSNTTLIITSALFGFLLQWSGALALGATSAISHVVLGQFKTCVVLLGNYYIFGANPGVTS IFGALIAIGGMSGFTYLNLLQNAKSQTAPQKSPGKDKSRLNKENGGNTSDGYGEESV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	0	1
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	1.7	0.8320
AT3G17900			unknown protein		Lus10013273 [exp]	2.0	0.8386
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	3.2	0.8373
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	3.5	0.8315
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	3.7	0.7958
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	6.3	0.7943
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	11.2	0.7944
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	11.3	0.7950
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	13.0	0.8055
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	13.1	0.7619

Compare expression of checked genes

Lus10015541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.