Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 355 / 9e-125 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29150 110 / 7e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 103 / 4e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 102 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 95 / 8e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 93 / 2e-22 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT1G07440 92 / 7e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 92 / 9e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020019 [exp] 457 / 6e-165 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001430 [exp] 387 / 4e-137 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001636 [exp] 182 / 3e-58 AT4G05530 174 / 9e-56 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040735 [exp] 112 / 2e-29 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 110 / 1e-28 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 108 / 6e-28 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 107 / 1e-27 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 105 / 8e-27 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 105 / 9e-27 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022500 [exp] 391 / 6e-139 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.011G022400 [exp] 370 / 1e-130 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G089800 [exp] 103 / 4e-26 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 101 / 2e-25 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G135510 [exp] 99 / 2e-24 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 96 / 2e-23 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G025400 [exp] 94 / 1e-22 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.010G142600 [exp] 94 / 2e-22 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G105700 [exp] 93 / 2e-22 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 94 / 3e-22 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10015542 pacid=23173621 polypeptide=Lus10015542 locus=Lus10015542.g ID=Lus10015542.BGIv1.0 annot-version=v1.0 ATGAGCAAGATCGGGAGACGATTTGAGGGTAAGGTCGCGATCGTCACCGCTTCCACTCAGGGTATTGGGTTTTCCATCGCTCAGCGACTTGGACTTGAAG GCGCCTCTGTTGTTATCTCCTCCCGCAAACAGCATAATGTAGATGAGGCAGCTGCGAAGCTTCGGGAACACGGTATCCAAGTGTTGGGTGTGGTTTGTCA TGTCTCTAATGCAGAACAGAGAAAGAATCTCATCGACAAAACTGTTGAGAAATATGGAAAAATAGATGTGGTGGTATCCAATGCTGCTGCCAACCCCTCG ACCGAGTCCATCGTAGAAACCAAAGAATCAGTCCTCGACAAGTTGTGGGAAATCAACGTCAAAGCATCTATCCTTCTGTTAAAGCTCGAGGCACAGAAAC TAGGCACTCAAACTTACATTTGCTGTCCGCAGGATGCAGCTCCATACATGCAAAGGGGTTCTTCAGTTGTTCTGGTTTCCTCAATTACCGGCTACCACCC ACCAGCGTCAATGGCTATGTATGGGGTCACGAAGACTGCCCTTCTCGGGCTCACTAAGGCACTTGCAGCTGAGATGGCGCCTGAGGTTCGTGTTAACTGT ATAGCCCCAGGTTTTGTGCCAACACATTTTGCTTCATTCCTTACCAGCAATGATGAATTGAGGAAGTCCCTAGAAGAGAAGACGTTACTAAACAGGTTGG GAACCACAGAAGACATGGGAGCGGCAGTGGCCTTTTTGGCGTCAGACGATGCTTCCTACATAACTGGCGAAACTTTAGTGGTGGCTGGTGGGATGCCATC TCGGCTTTAA
AA sequence Show only first row Show all	>Lus10015542 pacid=23173621 polypeptide=Lus10015542 locus=Lus10015542.g ID=Lus10015542.BGIv1.0 annot-version=v1.0 MSKIGRRFEGKVAIVTASTQGIGFSIAQRLGLEGASVVISSRKQHNVDEAAAKLREHGIQVLGVVCHVSNAEQRKNLIDKTVEKYGKIDVVVSNAAANPS TESIVETKESVLDKLWEINVKASILLLKLEAQKLGTQTYICCPQDAAPYMQRGSSVVLVSSITGYHPPASMAMYGVTKTALLGLTKALAAEMAPEVRVNC IAPGFVPTHFASFLTSNDELRKSLEEKTLLNRLGTTEDMGAAVAFLASDDASYITGETLVVAGGMPSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	0	1
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	1.0	0.8849
AT1G71780			unknown protein		Lus10040812 [exp]	2.4	0.8414
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	2.8	0.8371
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	5.3	0.8426
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	5.9	0.8344
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	7.1	0.8130
AT1G69980			unknown protein		Lus10010734 [exp]	7.7	0.8367
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	10.5	0.8303
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	10.8	0.8334
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	12.0	0.8345

Compare expression of checked genes

Lus10015542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.