Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22010 862 / 0 SKS4 SKU5 similar 4 (.1) AT1G76160 755 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 735 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 730 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 721 / 0 SKS7 SKU5 similar 7 (.1) AT4G38420 674 / 0 SKS9 SKU5 similar 9 (.1) AT5G66920 616 / 0 SKS17 SKU5 similar 17 (.1) AT4G28090 606 / 0 SKS10 SKU5 similar 10 (.1) AT2G23630 567 / 0 SKS16 SKU5 similar 16 (.1) AT4G37160 565 / 0 SKS15 SKU5 similar 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020022 [exp] 1031 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10035282 [exp] 778 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 775 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 743 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 724 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 717 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 677 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10016770 [exp] 661 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022648 [exp] 650 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G010100 [exp] 880 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.002G227600 [exp] 805 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 796 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 787 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 755 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 749 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 675 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.007G038200 [exp] 593 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.001G000500 [exp] 563 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 548 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10015545 pacid=23173614 polypeptide=Lus10015545 locus=Lus10015545.g ID=Lus10015545.BGIv1.0 annot-version=v1.0 ATGATAGAATCCAGCAGCAAGCTCGTATATTATCTATCCCTTTTCTTTCTTCTTGCTCTGGGTTTGGTCAATGCAGACTCTCCCTACCGATTCTACACCT GGAAAGTCACTTACGGCAATATCTACCCTCTTGGTGTCAAGCAACAGGGGATACTGATTAATGGGGAATTCCCAGGCCCCCACATCGATGCAGTCACTAA CGATAACGTCATTATCAATGTCTACAACTATCTCAAAGAGCCTTTCCTCCTCTCCTGGAATGGAATTCAGCACAGGAGAAACTCATGGCAGGACGGAGTG TACGGAACCAACTGTCCCATCAACCCAGGAAGGAACTTCACTTACATTCTTCAATTCAAGGACCAGATTGGAACATTCTTCTACTTCCCATCATTGGGTT TCCACAAGGCAGCCGGTGGATTCGGCAGCATTCGAGTGTGGAGCCGTCCCAGAATCCCAGTCCCTTTCCCTCCTCCTGCTGGTGATTTCGTGCTTCTTGC TGGTGACTGGTACAAGACCAATCACTACATATTGAGGCGGTTCTTGAATGCGGGTCGCGGACTTCCCATGCCAGACGGCCTTCTCATCAATGGCCGTGGA TGGAATGGAAACACTTTCAGGGTCGATCCAGGGAGGACGTATAGGTTCAGGATATCGAATGTAGGACTGGCGACATCGATCAACTTCAGGATACAGGGCC ACACAATGAAGCTAGTGGAGGCTGAAGGATCTCATACCGTACAGAACATATACACCAGCCTTGATGTTCATCTGGGCCAATCTTACTCTGTGTTGGTCAC TGCTGATCAGCCTGCTAAAGATTACTACATTTTTGTATCCACCCGGTTCACCACCAAAGTCCTCACCACGACATCAGTTCTTCACTACAGCAACTCCGGC AGTGGAGTTTCAGGTCCCATTCCTGGTGCTCCAACCACAGAGATCAATTGGTCCATCAACCAGGCCAGAACTATAAGGAGGAATTTGACAGCAAGCGGGC CAAGGCCGAACCCACAAGGATCATACCACTACGGAATGATAAAGCCAACCAGAACAATCACACTCGCCAATTCAGCACCTTGGATCAACGGCAAACAGAG GTACGCCGTCAACAGCGTATCATTCGTCCCGGCCAGCACTCCCTTAAAGCTAGCGGACTACTTCAACATCCCGGGAGTGTTCAACGTGGGGAGCATCCCG ATGAGCCCCACATGGGGGAACGCATACCTCCAGACCTCAGTCATGGGCGCCAACTTCCGCGAGTACGTGGAGATCATTTTCCAGAACTGGGAGAACACCG TCCAATCTTGGCATATCGACGGCCATGCTTTTTTCGTGGTCGGGATGGACGGAGGGCAGTGGACCCCGGCGAGTAGACTCCGTTACAATTTGAGAGACAC CGTCAGTCGGTATACGGTGCAGGTGTATCCGAGAGCGTGGACGGCGATATACATGGCTCTGGATAACGTCGGGATGTGGAATATCAGATCGGAGAATTGG GAGAGGCAGTATTTGGGGCAGCAGTTGTATCTTAGGGTATACAGCGCGTCTCGTTCGTGGAGAGATGAACTCCCCATTCCGAAGAATGCTCTTATCTGTG GCAGAGCAAGGGGACGTCACACCCGCCCTCTGTAA
AA sequence Show only first row Show all	>Lus10015545 pacid=23173614 polypeptide=Lus10015545 locus=Lus10015545.g ID=Lus10015545.BGIv1.0 annot-version=v1.0 MIESSSKLVYYLSLFFLLALGLVNADSPYRFYTWKVTYGNIYPLGVKQQGILINGEFPGPHIDAVTNDNVIINVYNYLKEPFLLSWNGIQHRRNSWQDGV YGTNCPINPGRNFTYILQFKDQIGTFFYFPSLGFHKAAGGFGSIRVWSRPRIPVPFPPPAGDFVLLAGDWYKTNHYILRRFLNAGRGLPMPDGLLINGRG WNGNTFRVDPGRTYRFRISNVGLATSINFRIQGHTMKLVEAEGSHTVQNIYTSLDVHLGQSYSVLVTADQPAKDYYIFVSTRFTTKVLTTTSVLHYSNSG SGVSGPIPGAPTTEINWSINQARTIRRNLTASGPRPNPQGSYHYGMIKPTRTITLANSAPWINGKQRYAVNSVSFVPASTPLKLADYFNIPGVFNVGSIP MSPTWGNAYLQTSVMGANFREYVEIIFQNWENTVQSWHIDGHAFFVVGMDGGQWTPASRLRYNLRDTVSRYTVQVYPRAWTAIYMALDNVGMWNIRSENW ERQYLGQQLYLRVYSASRSWRDELPIPKNALICGRARGRHTRPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	2.0	0.9616
AT3G51930			Transducin/WD40 repeat-like su...		Lus10024180 [exp]	2.4	0.9551
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	4.2	0.9553
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	4.9	0.9534
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	6.9	0.9510
					Lus10038634 [exp]	9.5	0.9403
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	10.7	0.9515
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	13.0	0.9392
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	13.6	0.9435
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	14.7	0.9409

Compare expression of checked genes

Lus10015545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.