Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13890 233 / 1e-73 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G26660 205 / 7e-63 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G63910 205 / 1e-62 MYB AtMYB103 myb domain protein 103 (.1) AT1G57560 201 / 9e-62 MYB ATMYB50 myb domain protein 50 (.1) AT4G01680 198 / 9e-62 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G09540 201 / 2e-61 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G12720 196 / 3e-60 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G08500 174 / 3e-51 MYB ATMYB83 myb domain protein 83 (.1) AT5G12870 172 / 6e-51 MYB ATMYB46 myb domain protein 46 (.1) AT4G12350 169 / 1e-49 MYB ATMYB42 myb domain protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037625 [exp] 302 / 2e-100 AT3G13890 192 / 5e-58 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10024669 [exp] 201 / 1e-59 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 201 / 2e-59 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10038022 [exp] 198 / 4e-59 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10038395 [exp] 182 / 6e-55 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 182 / 2e-54 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10031281 [exp] 174 / 3e-51 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10002559 [exp] 174 / 5e-51 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10027369 [exp] 174 / 6e-51 AT5G12870 218 / 5e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197000 [exp] 237 / 5e-75 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.001G099800 [exp] 204 / 3e-63 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.003G155700 [exp] 205 / 4e-63 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.003G132000 [exp] 204 / 5e-63 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.008G081600 [exp] 202 / 5e-62 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.012G084100 [exp] 201 / 3e-61 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 201 / 3e-61 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.013G001000 [exp] 203 / 4e-61 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 202 / 2e-60 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 199 / 8e-60 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015608 pacid=23147255 polypeptide=Lus10015608 locus=Lus10015608.g ID=Lus10015608.BGIv1.0 annot-version=v1.0 ATGGGGCATCACTCATGTTGCAACAAGCAGAAGGTGAAGAGAGGGCTATGGTCTCCCGAGGAAGACGAGAAGCTCATTAACTACATCTCAACTTACGGTC ATGGTTGCTGGAGCTCCGTCCCTAAACTCGCTGGAATTCAGAGATGCGGGAAGAGTTGTAGGTTAAGATGGATAAATTACTTGAGGCCGGATCTCAAAAG AGGGAGCTTCTCTCCACAAGAAGCTGCCCTTATTATTGAACTCCACACCATTCTTGGCAATAGATGGGCTCAGATTGCAAAACATTTGCCAGGGAGAACC GACAATGAAGTGAAGAACTTTTGGAACTCAAGCATTAAGAAGAAGCTCATCTCTCACCATCTTCATCATCAATTTCATCATGGAGTTATGATCAATGTCC CACCATCGGGACCGTCTGGATTCGATCCCAATTCCTCTTCTTCGGCCTCTTCTTCTCTACTTTCTGGAGGAGGAGAAGAAGCCTTCTTCTCCGCGAATCA TCATCACATGTTGGTATCCCCATCCCCGAGCAACAACAACATAATTAATGATGTATCCTCTTCTTCAGTTCTTCAAAGTTATGGTAACATCACGATTAGT GATCATCATCATTTCAATCTCTTTGATCAACAATATTTCCCAAACCCATTTCTCATCAACTCTTCTTCTTCTTCATCATCACCTTCTTCTCTTCTCAACA TCATTAATGACCCAATTTGGCCTCCACCACCATCTTTCCCTTTCTTGCCACAACAACATTATGACCACCAACACCTACTCATGATGAACAACATTGATCA AGATCAGCATCACGATCAAATCTTGATCACCAACGTTAACAACGACGATGATGGTACTAAACAAGATGATCATGACCATCAAATCTCGATCCCTTATGAC AATGATGATGATGATCTACTCATGATGCCATCATCACCTAAGCTTTCTGACCAAGCACCGCCAAAGCAGGAGGACCAAGACCACCCTCTTTCCATGACAT CACCACCACCACCAATGGCCGCTAGCTCGAGCCAGATTGATGATCATCAGTACATGGAAGCCATGTTCATATCATCCTTACCATCACCATCACCGGCATT CCTTGGTTGGAACATGACTGGATAG
AA sequence Show only first row Show all	>Lus10015608 pacid=23147255 polypeptide=Lus10015608 locus=Lus10015608.g ID=Lus10015608.BGIv1.0 annot-version=v1.0 MGHHSCCNKQKVKRGLWSPEEDEKLINYISTYGHGCWSSVPKLAGIQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRT DNEVKNFWNSSIKKKLISHHLHHQFHHGVMINVPPSGPSGFDPNSSSSASSSLLSGGGEEAFFSANHHHMLVSPSPSNNNIINDVSSSSVLQSYGNITIS DHHHFNLFDQQYFPNPFLINSSSSSSSPSSLLNIINDPIWPPPPSFPFLPQQHYDHQHLLMMNNIDQDQHHDQILITNVNNDDDGTKQDDHDHQISIPYD NDDDDLLMMPSSPKLSDQAPPKQEDQDHPLSMTSPPPPMAASSSQIDDHQYMEAMFISSLPSPSPAFLGWNMTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	1.7	0.9099
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	2.8	0.9015
					Lus10021381 [exp]	4.0	0.8618
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	6.5	0.8941
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	8.8	0.7016
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	10.0	0.7697
					Lus10001186 [exp]	10.7	0.8290
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	11.7	0.8088
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	12.7	0.8088
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	13.0	0.7454

Compare expression of checked genes

Lus10015608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.