Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 400 / 1e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 365 / 2e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 362 / 9e-105 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 347 / 5e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 342 / 1e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16890 342 / 2e-98 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 335 / 1e-96 TAO1 target of AVRB operation1 (.1) AT3G44480 331 / 4e-95 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 329 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 326 / 3e-93 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015650 [exp] 1450 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 1118 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018021 [exp] 1066 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 932 / 0 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 917 / 0 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023051 [exp] 885 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 870 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 851 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 843 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 559 / 8e-180 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 539 / 4e-172 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 508 / 3e-160 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G010800 [exp] 503 / 9e-158 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 502 / 1e-156 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 500 / 3e-154 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 481 / 9e-149 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 466 / 2e-146 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 451 / 4e-139 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 448 / 2e-137 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10015648 pacid=23147266 polypeptide=Lus10015648 locus=Lus10015648.g ID=Lus10015648.BGIv1.0 annot-version=v1.0 ATGGCTGCAGATATTTCTTCTTCTGCACCTCGTACTTCTCCTTATACCGGAGAATGGGAGTACGATGTTTTCTTGTGTTTTAGAGGCGACACACGCCACG GTTTCACCAGCCACCTCCTGTCTGCTTTATCAGACAAGCAAATCAGAACCTTCATTGACCACAAGCTCGCAAAAACTGAAAGCATCGATGAGCTAATCTC GATCCTCCAGAGATGTGCTCTTTCTGTGGTGGTTTTCTCCGAAAAGTTTGCGGATTCAGAGTGGTGCTTGGAAGAGGTGGTTACTATTGCTGAAAGGATG AAGAAAGTTGGGCACAGAGTTCTTCCGGTTTTCTATAAAGTGGATCCGTTCGATGTGACAGATGAACCGAGAAGCTATATGGCTACCATCGATCGTGAAT ATAAAGCTAGAAGTAGCTTTTTGGAGGATAAGAAGAGATGGATGGATGCTGTGAACGCTGTGGCTAATTGTGCTGGTCATACTTCGCAGGCCATCAAAAT TGAATCGGAATTGATTAAGGCGGTTGTGGAAACTGTTCAGAAGCAATTAATTGACATGTCACCGAGTATCAATCGTAATAACTTGGTTGCTATGGGTTCA CGTATTTTCGAGATTGAGCGACTATTAGCTATGGACAAACTAGATGATACTTGCATCATTGGGCTATGGGGAATGGGCGGTGTTGGGAAAACAACTCTAG CCGAAGCGTGTTATGAAAGGGTAACTTCGTCCAACAAAGGAATCAAACATCTTTTCGTTCGAAACGTGAATGAAATATGTGAAAAGCATCATGGCGTTGA AAAAATTGTTCACAAACTCTATTCAAAATTGTTGGACGAGAATAACATCGACCGTGAAGATTTGAATATTGCTTATCGAAGGGAACGTCTTTCGCGCTCG AGGGTATTCGTTGTTCTAGACAACGTTGAAACTTTGGAGCAATTGGAGCAATTGGCTTTAGGATATGTGTTCAATCTCAGCAAAGTCTTTGCAGCGGGGA GTAGGATCATCATCACCACAAGAAATAAAAAGGTGCTTCAAAATGCTATGGCCAAGATTTACAATGTCGAGTGTTTGAATAACAAGGAATCTATCCGATT GTTTAGCTTACATGCATTCAAACAAGATCGACCTCAAGATAATTGGACGGATAAGTCACATCTTGCAATATCATATTGCAAGGGGAATCCTTTGGCACTC AAAATCTTGGGGGGTGCATTGTTCGGTGAAGATGTACATTATTGGAGAAGTCTCTTGACCGGTTTGAGGCAATCTGGAAACCTAGGTATTGAGAGTATTC TGAGGAGAAGTTATGATAAACTTGGGAAGGAAGAGAAGAAAATATTTATGGATGTTGCCTGTCTACTCTATGGCATGTCAAGATCTAGACTGATTGATTA TATGGCGACCATGTATTCCTCTTCTTATGTCAGGGTGAAGGATTTAATTGATAAATCCCTATTAACATGTGTTCCTAGCGAGAATGGAGAGATGATTGAG GTGCATGATTTGCTTAAAGAAATGGCTTGGAACATTGTCAAAGAAGAACCAAAGCTTGGCAAACGAAGCAGATTAGTAGATCCGGATGATGTCCATAAAT TATTGTCAACTTCAGAGGTTAAAAATTGGAGTACATCAATCGTCAACCTCTTCAAAGGCATAGTGATGGTCATACCAAGAAGGAAAAGAAGAAAAGTCAC TGACATGCATGAGAGAGGCTATGATCCATTGGAGGAACATCGAACAACTGAAGGTATATGTTTGGATCTCTCTGGAACTAAAGAGATGTATTTGAAAGCA AATGCCTTTGAGGGTATGAATTCTCTTACATTTCTCAAATTCAAGTCGCCAGAACTTGATTATGCTCAATATCCTTTAAAAAATGTGAAGACGAAAATTC ATTTGCCTTACGATGGACTTAACTCCCTTCCGGAGGGGTTAAGATGGTTGCAGTGGGATGGATATCCTTCAAAATCTCTACCGGCAAAGTTTTATCCCCA ACACCTTGTTCATCTCATTATACGTGGAAGTCCAATTCGAAGATGTTGGGAAGGATATGATCAACCCCAACTTGTGAACTTGATTGTGCTTGATCTCCGC TACTGTACAAATCTAATCGCTATTCCGGATATATCAAGTTCTTTGAATCTCGAAGAACTCCTTCTTTTTGGATGCAGAAGCCTAGTTGAGGTACCATTTC ATGTTCAATATTTGACCAAGCTGGTAACGCTAGACATCAATGTTTGCAAAAATCTCAAGCGTCTTCCACCTAAACTTGACTCAAAGTTACTTAAGCACGT TCGGATGCAAGGGCTCGGGATCACTCGCTGTCCAGAGATTGATTCAAGAGAGTTGGAGATATTTGATTTACGTTTTACATCTCTTGGAGAGTTACCCAGT GCAATTTACAATGTCAAGCAAAATGGAGTCCTACGTCTCCATGGCAAAAACATTACCAAATTTCCTGGAATTACAACAATATTGAAGCTTTTTACATTAA GCCGTACTTCAATAAGGGAGATTGATTTGGCCGATTATCATCAACAGCATCAGACTTCTGATGGATTACTATTGCCAAGATTTCAGAATTTGTGGTTGAC AGGCAACCGGCAACTTGAGGTCCTGCCAAACAGTATATGGAACATGATTTCTGAAGAACTTTATATTGGTCGGAGCCCGCTGATTGAAAGTTTGCCGGAA ATCTCAGAGCCTATGAGTACCTTAACTTCTCTTCATGTATTCTGTTGTAGAAGCCTCACAAGTATTCCAACTAGCATCAGCAATTTAAGATCTCTGAGGT CGCTTCGTTTAGTAGAGACGGGTATTAAGTCACTGCCTTCTAGCATCCAAGAACTAAGGCAGCTTTTTTCGATTGATCTTAGAGATTGCAAAAGCCTCGA GTCAATTCCAAACAGTATCCATAAGCTTTCCAAGTTGGTAACTTTGTCAATGTCTGGCTGTGAGATCATTATATCTTTGCCTGAACTCCCACCAAATCTG AAGACCTTGAACGTAAGTGGTTGCAAGTCTTTACAAGCTCTACCAAGCAACACATGTAAGCTGTTGTACCTGAATAGGATCTATTTTGAGGAATGTCCAC AAGTGGATCAGACTATTCCTGCTGAGTTCATGGCAAATTTCCTCGTTCATGCCAGCTTGTCTCCGTCATATGAGCGGCAAGTTAGATGTTCAGGAAGCGA GCTTCCGAAATGGTTTTCGTACAGAAGCATGGAGGACGAGGATTGCAGTACTGTGAAAGTGGAGTTGCCTCTTGCTAATGATAGTCCTGACCATCCAATG ATTAAGGGAATTGCATTCGGCTGTGTGAATTCTTCCGACCCTTACTACTCTTGGATGCGTATGGGATGTCGTTGCGAGGTCGGTAACACCACTGTTGCAT CTTGGGTTTCCAACGAAAAAGTAATGGGCCCTGAAGAAAAGTCATCAGAAAAGGTATGGTTGGTGTTCAACAAGAATTTATCAAGTACGGGGTCTATGGG AAGCGAAGAAGATGAAGCGTGGTATGTGAAGTATGGCGGGTTCGATGTCTCATTCAATTTCTATTTTCTAGATTACGACGATGAAATCATAAAGAAGGTG AAAATAAAAAGATGTGGAGTCTCTCTGATGTATTAA
AA sequence Show only first row Show all	>Lus10015648 pacid=23147266 polypeptide=Lus10015648 locus=Lus10015648.g ID=Lus10015648.BGIv1.0 annot-version=v1.0 MAADISSSAPRTSPYTGEWEYDVFLCFRGDTRHGFTSHLLSALSDKQIRTFIDHKLAKTESIDELISILQRCALSVVVFSEKFADSEWCLEEVVTIAERM KKVGHRVLPVFYKVDPFDVTDEPRSYMATIDREYKARSSFLEDKKRWMDAVNAVANCAGHTSQAIKIESELIKAVVETVQKQLIDMSPSINRNNLVAMGS RIFEIERLLAMDKLDDTCIIGLWGMGGVGKTTLAEACYERVTSSNKGIKHLFVRNVNEICEKHHGVEKIVHKLYSKLLDENNIDREDLNIAYRRERLSRS RVFVVLDNVETLEQLEQLALGYVFNLSKVFAAGSRIIITTRNKKVLQNAMAKIYNVECLNNKESIRLFSLHAFKQDRPQDNWTDKSHLAISYCKGNPLAL KILGGALFGEDVHYWRSLLTGLRQSGNLGIESILRRSYDKLGKEEKKIFMDVACLLYGMSRSRLIDYMATMYSSSYVRVKDLIDKSLLTCVPSENGEMIE VHDLLKEMAWNIVKEEPKLGKRSRLVDPDDVHKLLSTSEVKNWSTSIVNLFKGIVMVIPRRKRRKVTDMHERGYDPLEEHRTTEGICLDLSGTKEMYLKA NAFEGMNSLTFLKFKSPELDYAQYPLKNVKTKIHLPYDGLNSLPEGLRWLQWDGYPSKSLPAKFYPQHLVHLIIRGSPIRRCWEGYDQPQLVNLIVLDLR YCTNLIAIPDISSSLNLEELLLFGCRSLVEVPFHVQYLTKLVTLDINVCKNLKRLPPKLDSKLLKHVRMQGLGITRCPEIDSRELEIFDLRFTSLGELPS AIYNVKQNGVLRLHGKNITKFPGITTILKLFTLSRTSIREIDLADYHQQHQTSDGLLLPRFQNLWLTGNRQLEVLPNSIWNMISEELYIGRSPLIESLPE ISEPMSTLTSLHVFCCRSLTSIPTSISNLRSLRSLRLVETGIKSLPSSIQELRQLFSIDLRDCKSLESIPNSIHKLSKLVTLSMSGCEIIISLPELPPNL KTLNVSGCKSLQALPSNTCKLLYLNRIYFEECPQVDQTIPAEFMANFLVHASLSPSYERQVRCSGSELPKWFSYRSMEDEDCSTVKVELPLANDSPDHPM IKGIAFGCVNSSDPYYSWMRMGCRCEVGNTTVASWVSNEKVMGPEEKSSEKVWLVFNKNLSSTGSMGSEEDEAWYVKYGGFDVSFNFYFLDYDDEIIKKV KIKRCGVSLMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	0	1
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	3.0	0.8539
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	4.2	0.8282
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	6.3	0.8094
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	6.6	0.7641
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	7.6	0.8325
					Lus10034884 [exp]	7.7	0.7978
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	7.9	0.7974
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	8.7	0.8085
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	10.6	0.7803
AT4G12010			Disease resistance protein (TI...		Lus10015650 [exp]	11.1	0.7412

Compare expression of checked genes

Lus10015648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.