Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 332 / 3e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 324 / 2e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 318 / 5e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 317 / 1e-92 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 308 / 2e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 304 / 9e-88 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44480 299 / 1e-86 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 299 / 2e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT2G14080 298 / 2e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 293 / 4e-85 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015648 [exp] 1456 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 1022 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007030 [exp] 813 / 0 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 788 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017418 [exp] 691 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10012246 [exp] 684 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 681 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 664 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017419 [exp] 661 / 0 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 439 / 2e-138 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 436 / 2e-137 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 437 / 1e-136 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 439 / 4e-136 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 427 / 1e-132 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 416 / 2e-129 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098500 [exp] 409 / 7e-129 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 409 / 1e-126 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 395 / 3e-124 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 396 / 2e-122 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10015650 pacid=23147267 polypeptide=Lus10015650 locus=Lus10015650.g ID=Lus10015650.BGIv1.0 annot-version=v1.0 ATGGCTTTTTCTTCTGCTTCTTCTTCTTCTTCACCTCAGAGTTCTCTGTATACTGGAGAATGGGAGTACGATGTTTTCTTGTGTTTTAGAGGCGATGACA CACGCGATGGTTTCACCAGCCACCTCCTGTCTGCTTTATCAGACAAAAAAATCAGAGCCTTCATCGACGAGAAGCTCGAAAAAACTGAAAGCATCGACGA GCTAATCTCGATCCTCCAGAGATGTCCTCTTTCTGTGGTGGTTTTCTCCGAGAGATTTGCGGATTCTATCTGGTGCTTGGAAGAGGTGGTTACTATCGCT GAAAGGATGGAGAAAGTTGGACACCGGGTTCTTCCGGTTTTCTATAAAGTGGATCCGTCCGATGTGAAAGATAAATCACATCGAACGGGTCCAAAGAGAT GGATGGATGCTTTGAAAGCTGTGGCTAAGTGTGCTGGTCATACTTCGCAGGCCATCAAAATTGAATCGGAATTGATTAAGGCGGTTGTGGAAACTGTTCA GAAGCAACTAATCGACATGTCACCGAGTATCAATCGTAATAACTTGGTTGCTATGGGTTCACGTATTTTCGAGGTTGAGCGACTATTAGCTATGGACAAA CTAGATGATACTTGCATCATTGGGCTATGGGAAATGGGCGGTGTTGGGAAAACAACTCTAGCCGAAGCGTGTTATGACAGGGTAACTTCGTCCAACAAAG GAATCAAACATCTTTTCGTTCGAAACGTGAATGAAATATGTGAAAAGCATCATGGCGTTGAAAAAATTGTTCACAAACTCTATTCAAAATTGTTGGACGA GAATAACATCGACCGTGAAGATTTGAATATTGGTTATCGAAGGGAACGTCTTTCGCGCTCGAGGGTATTCGTTGTTCTAGACAACGTTGAAACTTTGGAG CAATTGGCTTTAGGATATGTGTTCAATCTCAGCAAAGTCTTTGCAGCGGGGAGTAGGATCATCATCACCACAAGAAATAAAAAGGTGCTTCAAAATGCTA TGGCCAAGATTTACAATGTCGAGTGTTTGAATGACGAGGAATCTACCCGGTTGTTTAGCTTACATGCATTCAAACAAGATCGACCTCAAGATAATTGGAT GGGTAAGTCACGTCTCGCAACATCATATTGTAAGGGAAATCCTTTGGCACTCAAAATCTTGGGGGGTGCATTGTACGGTGAAGATATACATTATTGGAGA AGTTTCTTGACCGGTTTGAGGCAACCTGGAAACCTAGGTATTGAGAATATTCTGAGGAGAAGTTATGATAAACTTGGGAAGGAAGAGAAGAAAATATTTA TGGATGTTGCCTGTCTACTCTATGGCATGTCAAGATCTAGACTGATTGATTATATGGCGACTATGTATTCCTCTTCTTATGTCAGGGTGAAGGATTTAAT TGACAAATCCCTATTAACTTGTGTTTCTAGCAAGAATGAAGACAAGATTGAGGTGCATGATTTGCTTAAAGAAATGGCTTGGAACATTGTCAAAGAAGAA CCAAAGCTTGGCAAACGAAGCAGATTAGTAGATCCGGATGATGTCCATAAATTATTGTCAACTTCAGAGGTTAAAAATTGGAGTACATCAATCGTCAACC TCTTCAAAGGCATAGTGATGGTCATACCAAGAAGGAAAAGAAGAAAAGTCACTGACATGCATGAGAAAGGCTATGATCCATTGGAGGAACATCGAACAAC TGAAGAAATTAAGTATCCTCATTATCCTTTAAAAAATGTGAAGACGAAAATTCATTTGCCTTACTATGGACTTAACTCCCTTCCGGAGGGGTTAAGATGG TTGCAGTGGGATGGATATCCTTCAAAATCTCTACCGGCAAAGTTTTATCCCCAACACCTTGTTCATCTCATTATACGTGGAAGTCCAATTCGAAGATGTT GGGAAGGATATGATCAACCCCAACTTGTGAACTTGATTGTGCTTGATCTCCGCTACTGTGCAAATCTAATCGCTATTCCGGATATATCAAGTTCTTTGAA TCTCGAAGAACTCCTTCTTTGTCGATGCGTAAGCCTAGTTGAGGTACCATTTCATGTTCAATATTTGACCAAGCTGGTAACGCTAGACATCAATTATTGC AAAAATCTCAAGCGTCTTCCACCTAAACTTGACTCAAAGTTACTTAAGCACGTTCGGATGAAAAATCTCGAGGTCACATGCTGTCCAGAGATTGATTCGA GAGAGTTGGAGGAATTTGATTTAAGTGGTACATCTCTCGGAGAGTTACCCAGTGCAATTTACAATGTCAAGCAAAATGGAGTCCTACGTCTCCATGGCAA AAACATTACCAAATTTCCTGGAATTACAACAATATTGAAGCGTTTTAAATTAAGCGGTACTTCAATAAGGGAGATTGATTTGGCCGATTATCATCAACAG CATCAGACTTCTGATGGATTACTATTGCCAAAATTTCATAATTTGTCGTTGACAGGCAACCGGCAACTTGAGTCCTGCCAAACAGTATATGGAACATGA
AA sequence Show only first row Show all	>Lus10015650 pacid=23147267 polypeptide=Lus10015650 locus=Lus10015650.g ID=Lus10015650.BGIv1.0 annot-version=v1.0 MAFSSASSSSSPQSSLYTGEWEYDVFLCFRGDDTRDGFTSHLLSALSDKKIRAFIDEKLEKTESIDELISILQRCPLSVVVFSERFADSIWCLEEVVTIA ERMEKVGHRVLPVFYKVDPSDVKDKSHRTGPKRWMDALKAVAKCAGHTSQAIKIESELIKAVVETVQKQLIDMSPSINRNNLVAMGSRIFEVERLLAMDK LDDTCIIGLWEMGGVGKTTLAEACYDRVTSSNKGIKHLFVRNVNEICEKHHGVEKIVHKLYSKLLDENNIDREDLNIGYRRERLSRSRVFVVLDNVETLE QLALGYVFNLSKVFAAGSRIIITTRNKKVLQNAMAKIYNVECLNDEESTRLFSLHAFKQDRPQDNWMGKSRLATSYCKGNPLALKILGGALYGEDIHYWR SFLTGLRQPGNLGIENILRRSYDKLGKEEKKIFMDVACLLYGMSRSRLIDYMATMYSSSYVRVKDLIDKSLLTCVSSKNEDKIEVHDLLKEMAWNIVKEE PKLGKRSRLVDPDDVHKLLSTSEVKNWSTSIVNLFKGIVMVIPRRKRRKVTDMHEKGYDPLEEHRTTEEIKYPHYPLKNVKTKIHLPYYGLNSLPEGLRW LQWDGYPSKSLPAKFYPQHLVHLIIRGSPIRRCWEGYDQPQLVNLIVLDLRYCANLIAIPDISSSLNLEELLLCRCVSLVEVPFHVQYLTKLVTLDINYC KNLKRLPPKLDSKLLKHVRMKNLEVTCCPEIDSRELEEFDLSGTSLGELPSAIYNVKQNGVLRLHGKNITKFPGITTILKRFKLSGTSIREIDLADYHQQ HQTSDGLLLPKFHNLSLTGNRQLESCQTVYGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10015650 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10015649 [exp]	1.0	0.8260
AT3G49055			unknown protein		Lus10039244 [exp]	4.5	0.7478
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	11.1	0.7412
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	29.7	0.7213
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	32.9	0.7275
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	33.0	0.6999
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	37.4	0.5853
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	38.7	0.6948
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	40.8	0.6982
					Lus10030083 [exp]	45.0	0.6986

Compare expression of checked genes

Lus10015650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.