Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72570 197 / 2e-61 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 198 / 3e-60 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 197 / 1e-59 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 195 / 5e-59 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT3G20840 192 / 6e-58 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 189 / 8e-57 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 166 / 2e-48 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT5G10510 161 / 2e-46 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT3G54320 129 / 8e-36 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 123 / 6e-34 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037670 [exp] 320 / 6e-110 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 200 / 1e-60 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 198 / 4e-60 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 196 / 5e-60 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 196 / 7e-59 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 158 / 3e-45 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10001553 [exp] 144 / 4e-41 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10011731 [exp] 138 / 4e-40 AT4G37750 177 / 3e-52 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10030671 [exp] 142 / 1e-39 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064700 [exp] 224 / 2e-69 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 219 / 2e-68 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 198 / 2e-59 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 198 / 2e-59 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 195 / 3e-59 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 198 / 4e-59 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 197 / 4e-59 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 196 / 1e-58 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 196 / 3e-58 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 191 / 9e-58 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10015653 pacid=23147204 polypeptide=Lus10015653 locus=Lus10015653.g ID=Lus10015653.BGIv1.0 annot-version=v1.0 ATGTCTGGTTCGGTGTACCCGACATTGACGGTTGTTGTTGAAGGCATAGGTGGACAGGGAGATACGAGGCTCATTTGTGGGACAATAGTTGTAGGAAGGA AGGCCAAACTAGGAAAGGGAGACAAGTTGAGCACTTATGAAAAGGAGCTAGAAGAGATGAAGCACATGACCAGGCAAGAGTTTGTTGCTAACTTGAGAAG AAAAAGCAGTGGGTTCTCAAGAGGAGCGTCAATATATCGAGGTGTGACAAGGCATCATCAACATGGGCGATGGCAAGCTAGAATTGGGAGAGTTGCTGGG AACAAAGACTTGTACCTCGGCACATTCAGTACCCAAGAGGAAGCAGCCGAGGCATACGACATTGCGGCGATCAAATTCAGAGGGACGAGCGCCGTCACTA ATTTCGATATTAGCCGGTACGACGTCAAGAGAATCTGCTCTAGCTCCACCTTGATCGCCGGCGATCTCGCCAAACGCGCTTCTCCACCAGAGCCGGTGGT ACCCTTGCTTGCTATATCGAGCGGGGAATGCTCGGAGGATGGGTTGCGTACCGATCATCATCATGTTGTGTGGAATAAAGACGATGTGAGTGACGTGGCA GCTGAGGTGGATCCGGGTCCCGGTGGGGCCGCCACGAGATGCTTGGACTTGGTTGGTCATCCAGTTCCAATGTTTGCTTTGTGGAATCAACAATGA
AA sequence Show only first row Show all	>Lus10015653 pacid=23147204 polypeptide=Lus10015653 locus=Lus10015653.g ID=Lus10015653.BGIv1.0 annot-version=v1.0 MSGSVYPTLTVVVEGIGGQGDTRLICGTIVVGRKAKLGKGDKLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAG NKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRASPPEPVVPLLAISSGECSEDGLRTDHHHVVWNKDDVSDVA AEVDPGPGGAATRCLDLVGHPVPMFALWNQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	2.2	0.9916
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	3.5	0.9881
					Lus10015654 [exp]	3.5	0.9884
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	5.0	0.9873
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	5.5	0.9887
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	5.8	0.9752
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	9.2	0.9864
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	9.8	0.9861
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	10.6	0.9863
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	11.5	0.9471

Compare expression of checked genes

Lus10015653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.