Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01140 267 / 2e-87 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G15310 262 / 3e-86 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 210 / 3e-66 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G21440 207 / 2e-64 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 199 / 6e-62 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 195 / 1e-60 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 197 / 2e-60 MYB ATMYB93 myb domain protein 93 (.1) AT3G02940 194 / 9e-60 MYB ATMYB107 myb domain protein 107 (.1) AT5G54230 193 / 2e-59 MYB ATMYB49 myb domain protein 49 (.1) AT5G16770 192 / 5e-59 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019086 [exp] 514 / 0 AT3G01140 272 / 1e-89 NOECK, myb domain protein 106 (.1) Lus10026620 [exp] 264 / 2e-87 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10033003 [exp] 259 / 2e-84 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10015376 [exp] 227 / 4e-72 AT5G15310 266 / 9e-88 myb domain protein 16 (.1.2) Lus10030378 [exp] 213 / 3e-67 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 212 / 4e-67 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039743 [exp] 195 / 3e-61 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10019085 [exp] 199 / 4e-61 AT5G07700 239 / 3e-76 myb domain protein 76 (.1) Lus10006740 [exp] 198 / 4e-60 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 281 / 8e-93 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.008G089700 [exp] 274 / 4e-90 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 274 / 4e-90 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.008G089200 [exp] 273 / 7e-90 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.002G157600 [exp] 209 / 9e-66 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 206 / 2e-64 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.011G125900 [exp] 202 / 2e-62 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 202 / 3e-62 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 199 / 2e-61 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.011G041600 [exp] 199 / 3e-61 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015712 pacid=23167685 polypeptide=Lus10015712 locus=Lus10015712.g ID=Lus10015712.BGIv1.0 annot-version=v1.0 ATGGACATCTCTGTTGGGTTGAGAAGAGGTCCATGGAGCTCTGAAGAGGATCAGAAGCTCTTATCTTTCGTCCAACTTCACGGCCATGGCAGCTGGCGTA CTCTGCCCCCTAAAGCTGGGCTCCAGAGATGCGGCAAAAGTTGCAGGTTGAGATGGATCAACTACCTTAGACCTGGAATCAAAAGAGGCAAATTCAGTCT CCATGAGGAACAAACCATTATCCAGCTCCATGCTCTTCTTGGCAACAGGTGGTCGGCAATAGCGGCACACTTGCCGAGAAGAACAGACAACGAGATAAAG AACCACTGGAACACTCACTTGAAGAAGAGGCTGTCTTTGATGGGGATTGACCCGGCCACCCACAAGTCCAAGACGGCCACCCTCCGCCGTCTCGATGGGG GAGACCCTAAGAACGCATCAACACTCAGCCACATGGCTCAGTGGGAAAGCGCCCGCCTCGAGGCTGAAGCCAGGCTGGTTCGGGAGTCGAATCTACTCCG AGACCATCATCAACAGCAGCCTAATCCAGCTATGCAGCACCATCATGATCAGGCACTGCTGAACAAGATGGCTTCTTCTTCCCGGCTCGCCCCTCCTCGA TGCTTGGATGTACTTAGAGTATGGCAGAACCAGCACAATAATTTTCAAGGACATGATGGTCATCATCATGATAATAATATCTATGCATGGCACTCATCAT CCTCGCCGCCATGGCCAAGATTGATGGAAAGTACGTTATTGGATGGTGATGGTACTAGTACTACTAGTAGCGGTACCAGAGGAATCAACTTGGTTGGTAA ATCCGTCGCGCAAGTTATTAGCAATGATGAGGAAGCTGGTGATGCCCTCTTTGTGGATTACTGGATTCGTGATGATGATGGCGATCAGTTAGTCGATCTG CAGGTGGATTGGAATTCTACTAGCTGGACGGCTATGGACCGGACCAATGATTTATAA
AA sequence Show only first row Show all	>Lus10015712 pacid=23167685 polypeptide=Lus10015712 locus=Lus10015712.g ID=Lus10015712.BGIv1.0 annot-version=v1.0 MDISVGLRRGPWSSEEDQKLLSFVQLHGHGSWRTLPPKAGLQRCGKSCRLRWINYLRPGIKRGKFSLHEEQTIIQLHALLGNRWSAIAAHLPRRTDNEIK NHWNTHLKKRLSLMGIDPATHKSKTATLRRLDGGDPKNASTLSHMAQWESARLEAEARLVRESNLLRDHHQQQPNPAMQHHHDQALLNKMASSSRLAPPR CLDVLRVWQNQHNNFQGHDGHHHDNNIYAWHSSSSPPWPRLMESTLLDGDGTSTTSSGTRGINLVGKSVAQVISNDEEAGDALFVDYWIRDDDGDQLVDL QVDWNSTSWTAMDRTNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	0	1
					Lus10022823 [exp]	1.0	0.9472
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	3.9	0.8684
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	5.8	0.8746
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	7.3	0.8169
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	8.0	0.7763
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	8.2	0.8531
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	14.7	0.8028
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	15.2	0.7976
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	17.5	0.7543
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	18.7	0.8044

Compare expression of checked genes

Lus10015712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.