Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60890 146 / 5e-41 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT1G74080 145 / 2e-40 MYB ATMYB122 myb domain protein 122 (.1) AT5G07690 142 / 3e-39 MYB PMG2, ATMYB29 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2, myb domain protein 29 (.1) AT4G21440 139 / 5e-38 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G61420 139 / 7e-38 MYB HAG1, PMG1, ATMYB28 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1, HIGH ALIPHATIC GLUCOSINOLATE 1, myb domain protein 28 (.1.2) AT1G18570 138 / 2e-37 MYB HIG1, BW51B, BW51A, AtMYB51 HIGH INDOLIC GLUCOSINOLATE 1, myb domain protein 51 (.1) AT5G15310 136 / 7e-37 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G28110 133 / 4e-36 MYB ATMYB41 myb domain protein 41 (.1) AT5G07700 133 / 1e-35 MYB ATMYB76 myb domain protein 76 (.1) AT3G02940 132 / 2e-35 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019085 [exp] 417 / 2e-145 AT5G07700 239 / 3e-76 myb domain protein 76 (.1) Lus10030442 [exp] 133 / 2e-38 AT3G01140 170 / 5e-54 NOECK, myb domain protein 106 (.1) Lus10039743 [exp] 135 / 2e-37 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 135 / 2e-36 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 136 / 3e-36 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10002593 [exp] 134 / 5e-36 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10026620 [exp] 130 / 3e-35 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10000008 [exp] 124 / 3e-35 AT5G49330 142 / 5e-43 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10033438 [exp] 129 / 2e-34 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 139 / 2e-37 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.004G033100 [exp] 138 / 4e-37 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 136 / 8e-37 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 135 / 2e-36 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.011G041600 [exp] 135 / 4e-36 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 135 / 4e-36 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.012G140700 [exp] 131 / 2e-35 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.013G148600 [exp] 132 / 3e-35 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 131 / 4e-35 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.010G165700 [exp] 132 / 5e-35 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015713 pacid=23167675 polypeptide=Lus10015713 locus=Lus10015713.g ID=Lus10015713.BGIv1.0 annot-version=v1.0 ATGGGGAGAACACCGTGTTGCAATGTGGATGGTTTGAAGAAAGGAGCTTGGACTAGCGAGGAAGACCAGAAGCTCGTCTCCTACATTCAGGAGCATGGCG AAGGTGGCTGGCGTACTCTCCCACTCAAAGCAGGACTACAGAGGTGCGGGAAGAGCTGCAGGCTGAGATGGGCAAACTACTTGAGGCCAGACATTAAAAG AGGCGAGTTTAGCCCTGAGGAAGAAGAGAGGATTATTGAGCTCCATGCTTCTCTTGGCAACAGTCACAGCAACAAAAACAAGCCTCTGGGTCCCGCCACC TCAACTACTTCTGCTGACGTCGACCAACAATCTCACATCCAGGTGTCGACCTCCTCTTCTTCGGCTCAGCTTCTCAACAAGTTAGCCGCCAAGCTGGCTG AACAGGAGGGAGAAGAAGAAAGGGAAAACGACGTCGTTGAGGTCGAGGAACCGCTTCCTCGTCCAATGCGGCGGGTCGGGTCATCCACCTCATCAACCAG GCTACTGAACAAGATAGCTAGCCGGCTGGCCCAGCCGATGCACTGTCTCAACACCCTCAAGTCCATCCTCTCCTCAGCCGCTGACGGGGTCGACAGCGGC GGCTACGGGAACATGCAGAGGTGTGCGTCCACGTCAAGCCTCCAGTCGGACAGCACCGCCGCAACGTCCTCGGACATGTCGAGATCCAACCTCTCGAACT ACAACGACAACAGCGATGTCAACACGGGGGATTATAATGATCAGGACATGGCGTTCCTTGACATGTTGGACCTTGACAGCGTCCTCAACGACGACGACTG GCCATGTCATCAGCAGCAGCAATACGGTAGTAGTAGTACTTTGCCGTTCGGTGGGTCCCAATATTCCTTGGATTACGACTACGGTCACGGTTACAGTAGC ATGGATTTGGAGCAACCGTCTACGACGTCGTCGGCAAGTAAGAGTACTACTACTAACGACCGCGTGGATGATTCTTGTTATGATTACGGTTTCGGTGGGG AGCAGATCAGGGCCGATGATTACAATCACGGGATTGGAGGATTATTAGACGGTGACGATGAACACGGAAGGACTTTCTGGAATGACCACTATGATTCTCA TACTGCTTCGTTTTTCTGA
AA sequence Show only first row Show all	>Lus10015713 pacid=23167675 polypeptide=Lus10015713 locus=Lus10015713.g ID=Lus10015713.BGIv1.0 annot-version=v1.0 MGRTPCCNVDGLKKGAWTSEEDQKLVSYIQEHGEGGWRTLPLKAGLQRCGKSCRLRWANYLRPDIKRGEFSPEEEERIIELHASLGNSHSNKNKPLGPAT STTSADVDQQSHIQVSTSSSSAQLLNKLAAKLAEQEGEEERENDVVEVEEPLPRPMRRVGSSTSSTRLLNKIASRLAQPMHCLNTLKSILSSAADGVDSG GYGNMQRCASTSSLQSDSTAATSSDMSRSNLSNYNDNSDVNTGDYNDQDMAFLDMLDLDSVLNDDDWPCHQQQQYGSSSTLPFGGSQYSLDYDYGHGYSS MDLEQPSTTSSASKSTTTNDRVDDSCYDYGFGGEQIRADDYNHGIGGLLDGDDEHGRTFWNDHYDSHTASFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	0	1
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	1.7	0.8429
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	2.0	0.8026
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	4.0	0.7619
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	10.2	0.7841
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	12.0	0.7586
					Lus10000543 [exp]	12.4	0.7164
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	12.6	0.7590
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	14.3	0.7007
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	19.0	0.7393
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	19.7	0.7043

Compare expression of checked genes

Lus10015713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.