Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50940 422 / 4e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 409 / 7e-138 BCS1 cytochrome BC1 synthesis (.1) AT2G18193 402 / 3e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 383 / 7e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 377 / 7e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 372 / 1e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 356 / 5e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 340 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 325 / 2e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 325 / 2e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037004 [exp] 798 / 0 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 400 / 8e-136 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 369 / 5e-123 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 357 / 9e-119 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 342 / 2e-114 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 336 / 1e-110 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 332 / 7e-109 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 328 / 3e-107 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 323 / 2e-105 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177200 [exp] 541 / 0 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 439 / 6e-152 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 438 / 1e-150 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 434 / 7e-149 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 433 / 2e-148 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 417 / 4e-143 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 415 / 1e-141 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 383 / 8e-130 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 385 / 3e-129 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 366 / 9e-122 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015802 pacid=23167631 polypeptide=Lus10015802 locus=Lus10015802.g ID=Lus10015802.BGIv1.0 annot-version=v1.0 ATGTTCACCACATCCACCTTACCTTCGACCTCCTCGGTCCTATCGATGTACTCCACGTTTGCGGCCACGACAATGCTGATTCGGACCGTACTCAACGAGG TCCAAACCATAACCACCCAACTAATCCCGCACGCCCTCCGGACCAAGATCGCATCCGTCCTCGAACGTTTCCTATCCCTCGACCCGTCTTCTTCCCAACT GACCCTCTACATCAATGAGTACGACGGTATGTCGTACAACGAGCTGTACCAAGCCGCCGAAGCGTACTTGAGCACAAGGATCAACGACTCGGTCGGGCAG CTCAGGGTCAGCAAAAGATCTCAGGAGGAATCCTTATCGATTACTGTGAACCGAGGACAGAAGATTCACGATGTGTTTCAAGGAGTTGATCTCGTGTGGG AATTTGTTACGACGGAGACGCAACAGATTGTTGTTAATTATGAAGACATGTCAGGGGAACCGTCCAAGTCGGAGCATAAGACTGTTATGCTTAGCTTCCA TAAGCAACACAAAGATAAGATATTAAGTAGCTACCTTCCACAAGTAATGAAGACATTCAAGGAAATAGAGAGCAAGAAGAGATACGTGCGGCTGTACGCC TACGGCAGCATCACAGGCCAGTACGATGGACCTTGGTCGTACATCAATCTGGACCATCCATCAACGTTTGAGACGCTAGCAATGGATCCAACGCTCAAGA ATGAAATAATGGAAGATCTGGATCGGTTCGTGAGGCGCAGGGAGTTCTACCGCAGGGTAGGGAAACCGTGGAAGAGAGGGTACTTGCTGTACGGTCCACC TGGCACGGGGAAGTCCAGCCTGGTTGCTGCCGTGGCTAATCACTTGAAGTTCGATGTGTATGACCTGGAGCTGGCCAGCGTGGCGAGTAATGGCGAGCTG AGGAGGCTGCTGACTGGCACGGCGAACCGGTCTATTGTTGTGATTGAGGACATTGACTGTACCGTTGAGCTGCAGGATCGAGGTGGTGATGGGTACCAGC AGAATGGTACTGATACTCAGTTGACTCTGTCGGGACTGCTGAACTTCATTGATGGACTATGGTCCAGTTGCGGGGATGAGAGGATAATAATATTCACGAC GAACCACAAGGAGAAGCTAGACCCAGCATTGTTGAGGCCAGGACGCATGGACATGCACATCCACATGTCCTACTGCAGTCCTGGCGGGTTTAGGATTCTG GCCACCAACTACCTCCAGGTCGAAAGCCACGATCTTTTCGATCAGATCGAGCAGCTCGTTGATGAAGTTGAAGTGACGCCAGCAGAGATTGCCGAGGAGC TGATGAAGGGTGAAGATGTCGATGTTGTGCTTGAAGGAGTTGTTGGGTTTCTGGAGAAGAAGAGGAACGGGATGAAGTTGGAGAATGAGAAGGTTGAGGA AGTTGAGAAGAAGGTTTAG
AA sequence Show only first row Show all	>Lus10015802 pacid=23167631 polypeptide=Lus10015802 locus=Lus10015802.g ID=Lus10015802.BGIv1.0 annot-version=v1.0 MFTTSTLPSTSSVLSMYSTFAATTMLIRTVLNEVQTITTQLIPHALRTKIASVLERFLSLDPSSSQLTLYINEYDGMSYNELYQAAEAYLSTRINDSVGQ LRVSKRSQEESLSITVNRGQKIHDVFQGVDLVWEFVTTETQQIVVNYEDMSGEPSKSEHKTVMLSFHKQHKDKILSSYLPQVMKTFKEIESKKRYVRLYA YGSITGQYDGPWSYINLDHPSTFETLAMDPTLKNEIMEDLDRFVRRREFYRRVGKPWKRGYLLYGPPGTGKSSLVAAVANHLKFDVYDLELASVASNGEL RRLLTGTANRSIVVIEDIDCTVELQDRGGDGYQQNGTDTQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCSPGGFRIL ATNYLQVESHDLFDQIEQLVDEVEVTPAEIAEELMKGEDVDVVLEGVVGFLEKKRNGMKLENEKVEEVEKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	3.0	0.9450
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	4.9	0.9345
					Lus10036703 [exp]	6.6	0.9102
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	7.2	0.9370
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	7.7	0.9065
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	13.2	0.9080
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	13.4	0.8918
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	13.9	0.8943
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	14.1	0.8914
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	14.2	0.8992

Compare expression of checked genes

Lus10015802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.