Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 387 / 1e-134 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 224 / 2e-71 GONST4 golgi nucleotide sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037000 [exp] 454 / 4e-161 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034672 [exp] 374 / 1e-129 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 363 / 5e-126 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10033058 [exp] 244 / 4e-79 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 243 / 2e-78 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 237 / 3e-76 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 236 / 6e-76 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10024126 [exp] 42 / 0.0004 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 411 / 2e-144 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 408 / 5e-143 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 238 / 8e-77 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10015806 pacid=23167710 polypeptide=Lus10015806 locus=Lus10015806.g ID=Lus10015806.BGIv1.0 annot-version=v1.0 ATGCCTGGTGATGTGGAGAATCCTAAAGGTGTCCAGGACCAGAAGGGTACAGCACCATCCCCAACAACCAATGAAGCGAAGTCTACCTGGTCCAGTTTCT TGCTCGAAAAGACATCCATCAGGCTTGACCTCTTAACCATGTGGCGGTTCTTACCAGCTGCAATTATGTTCTACCTCTCGCTCTTCACCAACAGCGAGCT CTTACTCCATGCCAATGTCGATACCTTCATTGTCTTCCGTTCGGTGGTCCCTATCTTCGTCGCAGTAGGCGAGACTCTCTTCTTGCACCAGCCTTGGCCG GCTCTCAAGACGTGGCTCTCACTCGGAACCATCTTCGGCGGAAGCGTCCTCTATGTCTTGACAGATTACCAGTTTACCCTCACCGCATACAGTTGGGCTC TCGCTTACCTGATAAGCATGACCATCGATTTCGTGTACATTAAGCACGTCGTAATGACCATCGGTTTAAACACATGGGGTCTGGTCCTCTACAACAATCT CGAAGCCCTCCTCCTATTCCCATTGGAACTGCTGATCATGGGCGAACTGAAGAAGATCAAGCACGAGATATCGGAAGAGACTGATTGGTACTCGTTCGAG GTGGTTCTTCCTGTTGGACTGTCCTGTCTTTTCGGTTTAGCCATCTCTTTCTTCGGATTCTCCTGCCGGAGAGCAATCTCTGCTACTGGGTACACAGTTC TTGGAGTGGTTAACAAGCTTCTGACGGTGATAATTAATCTCGTTATTTGGGATAAGCATGCTACATTCGTTGGCACTGTCGGCTTGCTCATCTGTATGAC CGGTGGGATCTTATATCAGCAATCTACAAGCAACAAGCCAAAGGCTGCACCAGTAGTAGAAACAGAGGAAGAAGAAATAAAACTACTGGAAATGCAGAGT AGCAGCGAGAAAGAAGTATCTGAGCCTCAGCAAGGTAAATGA
AA sequence Show only first row Show all	>Lus10015806 pacid=23167710 polypeptide=Lus10015806 locus=Lus10015806.g ID=Lus10015806.BGIv1.0 annot-version=v1.0 MPGDVENPKGVQDQKGTAPSPTTNEAKSTWSSFLLEKTSIRLDLLTMWRFLPAAIMFYLSLFTNSELLLHANVDTFIVFRSVVPIFVAVGETLFLHQPWP ALKTWLSLGTIFGGSVLYVLTDYQFTLTAYSWALAYLISMTIDFVYIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEISEETDWYSFE VVLPVGLSCLFGLAISFFGFSCRRAISATGYTVLGVVNKLLTVIINLVIWDKHATFVGTVGLLICMTGGILYQQSTSNKPKAAPVVETEEEEIKLLEMQS SSEKEVSEPQQGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	5.7	0.9394
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	8.1	0.9398
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	8.8	0.9287
AT2G40800			unknown protein		Lus10030504 [exp]	9.5	0.9361
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	11.6	0.9054
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	11.7	0.9151
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	14.1	0.9336
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	14.1	0.8994
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	14.7	0.9278
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	14.7	0.9232

Compare expression of checked genes

Lus10015806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.